Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000406-TA|BGIBMGA000406-PA|IPR001452|Src homology-3
         (294 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   4.7  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    22   4.7  

>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 29  QSKHQRLLPTNLYVILYNFKSRHADE 54
           ++K  +LL  NLY I YNFK    ++
Sbjct: 112 KAKFGKLL-INLYTINYNFKESERND 136


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 40  LYVILYNFKSRHADELDLKAGYKVTVID 67
           +Y+IL   KS++     L A YKV   D
Sbjct: 146 IYLILDTIKSKYRQMHRLLANYKVITSD 173


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.135    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,954
Number of Sequences: 317
Number of extensions: 2938
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 294
length of database: 114,650
effective HSP length: 56
effective length of query: 238
effective length of database: 96,898
effective search space: 23061724
effective search space used: 23061724
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)