Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000406-TA|BGIBMGA000406-PA|IPR001452|Src homology-3
(294 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 47 3e-06
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 46 5e-06
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 45 1e-05
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 45 1e-05
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom... 42 8e-05
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual 41 2e-04
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 39 0.001
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 38 0.001
SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||... 38 0.002
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 38 0.002
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 36 0.007
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 36 0.009
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 35 0.012
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 32 0.085
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 31 0.15
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 30 0.45
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 28 1.8
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 27 2.4
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 27 4.2
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 4.2
SPAC11D3.02c |||ELLA family acetyltransferase |Schizosaccharomyc... 25 9.8
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 47.2 bits (107), Expect = 3e-06
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 43 ILYNFKSRHADELDLKAGYKVTVI-DTSDPDWWKGKCLGKIGYFPSKY 89
+LY+F + ADEL +KA +V ++ DT+ DWWK GK G PS +
Sbjct: 515 VLYDFIAEAADELTVKANMRVVIVNDTASSDWWKCSVDGKEGVVPSNF 562
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/63 (22%), Positives = 23/63 (36%)
Query: 37 PTNLYVILYNFKSRHADELDLKAGYKVTVIDTSDPDWWKGKCLGKIGYFPSKYCTKLQAG 96
P+ LY++ + DE+ +A + +D DW G P Y + A
Sbjct: 81 PSTKMKALYDYTQQSVDEISFQADQTLDCYGDTDSDWILVGFNNNFGLAPRNYVEGMDAS 140
Query: 97 ERP 99
P
Sbjct: 141 SAP 143
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 46.4 bits (105), Expect = 5e-06
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 44 LYNFKSRHADELDLKAGYKVTVIDTSDPDWWKGKCLGKIGYFPSKYCTKL 93
LY+F + EL K G + V+++ DWWKG C +G FP Y ++
Sbjct: 223 LYDFAATEQGELSFKKGDIILVLESVYKDWWKGSCKNAVGIFPVNYVQRV 272
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 45.2 bits (102), Expect = 1e-05
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 44 LYNFKSRHADELDLKAGYKVTVIDTSDPDWWKGKCLGKIGYFPSKYCTKLQ 94
+Y+F A +L AG + V++ + DWW+G+ GK G FPS Y L+
Sbjct: 148 MYDFPGPDAGDLGFHAGEVIIVLEHVNNDWWRGELNGKEGIFPSNYVRLLE 198
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 45.2 bits (102), Expect = 1e-05
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 44 LYNFKSRHADELDLKAGYKVTVIDTSDPDWWKGKCLGKIGYFPSKYCTKL 93
+Y+++++ +EL + +D DP+WW+G+C G G FPS Y ++
Sbjct: 808 IYDYQAQEDNELSFFEDEIIANVDCVDPNWWEGECHGHRGLFPSNYVEEI 857
Score = 37.1 bits (82), Expect = 0.003
Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 42 VILYNFKSRHADELDLKAGYKVTVIDTSDPDWWKGK-CLGKIGYFPSKY 89
+++Y++ +E++L ++ +++ D WW G+ G+ G FPS Y
Sbjct: 731 IVIYDYSPEEENEIELVENEQIQILEFVDDGWWLGENSKGQQGLFPSNY 779
>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 420
Score = 42.3 bits (95), Expect = 8e-05
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 44 LYNFKSRHADELDLKAGYKVTVIDTSDPDWW-------KGKCLGKIGYFPSKYCTKL 93
+Y+F R+ ELDL G + V + PDW+ K + LG G FP YCT++
Sbjct: 287 IYSFTGRNEKELDLHTGDVIQVSEQLGPDWYMGEKVNSKAEKLGNSGMFPVNYCTRI 343
>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 40.7 bits (91), Expect = 2e-04
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 37 PTNLYV-ILYNFKSRHADELDLKAGYKVTVIDTSDPDWWKG----KCLGKIGYFPSKYCT 91
P YV LY +K+ E+DL + V++ WWKG +G+IG FPS Y
Sbjct: 352 PIFAYVRALYAYKATLPSEIDLNVDDTLVVLNRQKDGWWKGLVVSPTVGRIGLFPSNYIE 411
Query: 92 KLQ 94
+L+
Sbjct: 412 ELE 414
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 42 VILYNFKSRHADELDLKAGYKVTVIDTSDP--DWWKGKCLGKIGYFPSKY 89
V LY++ ++ A +L AG ++ V+ +D +WW G+ G G FP Y
Sbjct: 413 VALYDYAAQAAGDLSFHAGDRIEVVSRTDNQNEWWIGRLNGAQGQFPGNY 462
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 39 NLYVILYNFKSRHADELDLKAGYKVTVIDTSDPDWWKGKCLGKIGYFPSKYCTKLQAGER 98
+LY+ LY+F R +E+ +K + ++ WW G G+ P+ Y T+ + G
Sbjct: 1109 DLYLALYDFAGRSPNEMTIKKDEIIEIVQKEPSGWWLALKNGAEGWVPATYVTEYK-GST 1167
Query: 99 PLQVTHNLQVS 109
P + V+
Sbjct: 1168 PQTTASSTNVA 1178
>SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 37.9 bits (84), Expect = 0.002
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 45 YNFKSRHAD-ELDLKAGYKVTVIDTSDP-----DWWKG-KCLGKIGYFPSKYCT 91
Y F SR E+ LK G + ++ +D +WW+G K G+ G+FPS YC+
Sbjct: 231 YEFMSRDPGVEMSLKKGDIIAILSKTDTQGNPCEWWQGRKRSGETGWFPSNYCS 284
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 37.9 bits (84), Expect = 0.002
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 45 YNFKSRHADELDLKAGYKVTVIDTSDPDWWKGKCLGK-------IGYFPSKYC 90
Y+F+ +EL LK G + V+ D WW G+ LG+ G FPS YC
Sbjct: 430 YSFEPETENELKLKKGDLLLVLKEIDEGWWVGEKLGEDGVFTGNTGMFPSNYC 482
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 35.9 bits (79), Expect = 0.007
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 42 VILYNFKSRHADELDLKAGYKVTVIDTSDPDWWKGKCLGKIG 83
++ ++F + DEL+ KAG + +I S+ +W K +G++G
Sbjct: 129 IVQFDFAAERPDELEAKAGEAIIIIARSNHEWLVAKPIGRLG 170
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1611
Score = 35.5 bits (78), Expect = 0.009
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 37 PTNLYVILYNFKSRHADELDLKAGYKVTVIDTSDPDWWKGKCLG-----KIGYFPSKY 89
PT + V LY ++S +D+L+ G + V+ D DW+ G + KIG FP +
Sbjct: 5 PTRV-VALYPYRSSFSDDLEFDPGQVIDVVSNLDGDWYTGTYVDSDGNRKIGSFPKDF 61
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 35.1 bits (77), Expect = 0.012
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 41 YVI-LYNFKSRHADELDLKAGYKVTVIDTSDPDWWKGKCL----GKIGYFPSKY 89
YVI LY+++++ +E+ + G + V+ T + WW G+ + K G FPS +
Sbjct: 870 YVIALYDYQAQIPEEISFQKGDTLMVLRTQEDGWWDGEIINVPNSKRGLFPSNF 923
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 32.3 bits (70), Expect = 0.085
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 27 KQQSKHQRLLPTNLYVILYNFKSRHADELDLKAGYKVTVIDTSDP--DWWKGKCLGKIGY 84
K + K L P N +Y+F +L + G + +++ S DWW G+ + G
Sbjct: 363 KPKFKQDSLGP-NQARAMYSFAGEQPGDLSFQKGDIIDIVERSGSHDDWWTGRIGYREGI 421
Query: 85 FPSKY 89
FP+ Y
Sbjct: 422 FPANY 426
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 31.5 bits (68), Expect = 0.15
Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 44 LYNFKSRHADELDLKAGYKVTVIDTSDPDWWKGKCLGK----IGYFPSKYCTKLQ 94
LY++ + +E+ + G + V+ + WW+G +G+ G FPS + +++
Sbjct: 615 LYDYDAAIPEEISFRKGDTIAVLKLYEDGWWEGFVVGEDDHNRGQFPSNFVREIE 669
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 29.9 bits (64), Expect = 0.45
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 42 VILYNFKSRHADELDLKAGYKVTVIDTSDPDWW-KGKCLGKIGYFPSKY 89
V+LY+F H + G + T+++ D W + K G G P+ Y
Sbjct: 521 VVLYDFTGEHEGVITASEGQEFTLLEPDDGSGWVRVKIDGTDGLIPASY 569
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 55 LDLKAGYKVTVIDTSDPDWWKGKCLGKIGYFPS 87
L AG + VI+ + W G C K G+FP+
Sbjct: 20 LKFSAGDTIIVIEVLEDGWCDGICSEKRGWFPT 52
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 27.5 bits (58), Expect = 2.4
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 44 LYNFKSRHADELDLKAGYKVTVIDTSDPDWWKGKCLGKIGYFPSKYCTKLQAGERPLQVT 103
L +KS + + + +T+ PD K K GK+ K T L+ GE L VT
Sbjct: 441 LTEYKSSKDKGVMMASRSLITLYREVAPDMLKRKDRGKLASIEMKDRTPLKYGEE-LNVT 499
Query: 104 HNLQ 107
H +Q
Sbjct: 500 HGIQ 503
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 26.6 bits (56), Expect = 4.2
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 11/108 (10%)
Query: 128 DEVDGMVMIRSGDNRQGVCPIKFLQEK--RGSLTDESKFYHPPKMIQSAPVTP----CDS 181
DE D + R R + P +L ++ R +LT ES + + + ++
Sbjct: 871 DEQDATEVYRHSIER--IVPGDYLHDEKTRDTLTRESPAFRSEEAVVEVADEDHPHASEA 928
Query: 182 ESTWSERNWSKYNNGSSPTYVRSGYDKYDSYIGN---DSTGLDEDGHR 226
E S N + ++ SSP + Y+ Y+ N +T +DEDGH+
Sbjct: 929 ERAHSYSNRKQASSESSPESQSTHYNDYEGTEDNIVRQTTTVDEDGHQ 976
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 26.6 bits (56), Expect = 4.2
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Query: 90 CTKLQAGERPLQVTHNLQVSDGDNGLMLLRDQIVIQVGDEVDGMVMIRSGDNRQGVCPIK 149
C + G ++ H L +G+ML R + +R+G +G+ P+
Sbjct: 293 CANIGIGAMLHELGHTLGCPHQPDGIML-RSYPIFNRSFTTREFECVRTGS--KGLAPVL 349
Query: 150 FLQEKRGSLTDESKF-YHPPKMIQSAPVTPCDSESTW 185
E D +F YHP + S P P D E+ +
Sbjct: 350 AKDECSWHHLDMLRFFYHPCFKLPSDPTYPSDIETNY 386
>SPAC11D3.02c |||ELLA family acetyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 25.4 bits (53), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 35 LLPTNLYVILYNFKSRHADELDLKAGY 61
LL TN++V+ DE+DLK G+
Sbjct: 24 LLRTNVFVVEQKCAYPEVDEIDLKCGH 50
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.135 0.430
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,328,252
Number of Sequences: 5004
Number of extensions: 57531
Number of successful extensions: 156
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 132
Number of HSP's gapped (non-prelim): 24
length of query: 294
length of database: 2,362,478
effective HSP length: 72
effective length of query: 222
effective length of database: 2,002,190
effective search space: 444486180
effective search space used: 444486180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)
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