Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000406-TA|BGIBMGA000406-PA|IPR001452|Src homology-3
(294 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0613 - 19232706-19232822,19232936-19233010,19233132-192332... 40 0.002
04_04_0656 - 26988766-26988830,26989311-26989371,26989514-269895... 39 0.006
03_02_0481 + 8789890-8789949,8790325-8790441,8790532-8790601,879... 38 0.007
07_03_0542 - 19256688-19256804,19257181-19257255,19257337-192574... 35 0.090
06_02_0085 + 11555539-11555632,11555767-11555867,11556947-115570... 31 0.84
03_05_0263 + 22503943-22506240 31 1.1
08_02_0091 + 12258666-12258974,12259195-12259637,12259732-122598... 31 1.5
11_01_0224 + 1752626-1752911,1754881-1754963,1755307-1755402 30 2.6
04_04_1517 + 34125549-34125634,34125725-34125789,34125878-341260... 28 7.8
01_06_1260 - 35820781-35821161,35821163-35821420,35821524-35821976 28 7.8
>10_08_0613 -
19232706-19232822,19232936-19233010,19233132-19233287,
19233412-19233549,19233571-19233771,19233985-19234086,
19234960-19235111,19235213-19235282,19235416-19235532,
19235674-19235733
Length = 395
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 44 LYNFKSRHADELDLKAGYKVTVIDTSDPDWWKGKCLGKIGYFPSKYCTK 92
+ ++++ EL+L AG + V S+ W +G+C GK G+FP Y K
Sbjct: 334 IQSYRAESETELNLAAGDYIVVRKVSNNGWAEGECRGKAGWFPYDYIEK 382
>04_04_0656 -
26988766-26988830,26989311-26989371,26989514-26989588,
26989694-26989849,26989975-26990061,26990140-26990340,
26990942-26991043,26991223-26991374,26991488-26991557,
26991646-26991765,26992708-26992761
Length = 380
Score = 38.7 bits (86), Expect = 0.006
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 44 LYNFKSRHADELDLKAGYKVTVIDTSDPDWWKGKCLGKIGYFP 86
L +FK+ EL+L AG V V S W +G+C GK G+FP
Sbjct: 316 LDSFKAESESELNLSAGDIVIVRKISTNGWAEGECKGKAGWFP 358
>03_02_0481 +
8789890-8789949,8790325-8790441,8790532-8790601,
8790688-8790836,8791520-8791621,8791692-8791892,
8792589-8792651,8792791-8793009,8793681-8793755,
8794003-8794101,8794521-8794691
Length = 441
Score = 38.3 bits (85), Expect = 0.007
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 43 ILYNFKSRHADELDLKAGYKVTVIDTSDPDWWKGKCLGKIGYFPSKY 89
+++ F ++ EL + G V V + W +G+C GK G+FPS Y
Sbjct: 328 VIHPFDAQADGELSISVGDYVVVRQVAPNGWSEGECKGKAGWFPSAY 374
>07_03_0542 -
19256688-19256804,19257181-19257255,19257337-19257426,
19257506-19257568,19257659-19257856,19257973-19258074,
19259276-19259424,19260136-19260205,19260460-19260582,
19261541-19261600
Length = 348
Score = 34.7 bits (76), Expect = 0.090
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 44 LYNFKSRHADELDLKAGYKVTVIDTSDPDWWKGKCLGKIGYFPSKY 89
++NF EL L G V V + W +G+C G G+FP+ Y
Sbjct: 287 VHNFNGTTEKELSLIVGDYVVVRQIAPNGWAEGECKGVAGWFPAAY 332
>06_02_0085 +
11555539-11555632,11555767-11555867,11556947-11557056,
11557152-11557227,11557412-11557555,11558432-11558503,
11558601-11559470
Length = 488
Score = 31.5 bits (68), Expect = 0.84
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 155 RGSLTDESKFYHPPKMIQSAPVTPCDSESTWSERNWSKYNNGSSPTYVRSGYDKYDSY 212
+G+ S + PP SAP T D + + S Y SSP Y R+ Y DSY
Sbjct: 263 QGTDYPSSDVHKPPHGYSSAPYTSTDYPTNEVHKPPSNY---SSPPYTRTDYPSSDSY 317
>03_05_0263 + 22503943-22506240
Length = 765
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 71 PDWWKGKCLGKIGYFPSKYCTKLQAGER 98
P WWKG+C+ G F S C + G R
Sbjct: 152 PSWWKGECMAGTG-FNSSACNRKLVGAR 178
>08_02_0091 +
12258666-12258974,12259195-12259637,12259732-12259873,
12259985-12260209,12260340-12260402,12260486-12260560,
12261900-12262160
Length = 505
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 61 YKVTVIDTSDPDWWKGKCLGKIGYFPSKYC-TKLQAGERPLQVTHNLQVSDGD 112
+KV TS P W G L + YF +KY T+ +RP+Q+T ++ D
Sbjct: 135 WKVAFHGTS-PRWVHGMYLAALAYFYAKYARTQPSQLDRPIQITFCFRLCSSD 186
>11_01_0224 + 1752626-1752911,1754881-1754963,1755307-1755402
Length = 154
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 231 GMWWWQRPLGVRRDHCQRCGASSS 254
G WWW RP G R H R G +++
Sbjct: 6 GWWWWHRPGGRRGGHPARRGDAAA 29
>04_04_1517 +
34125549-34125634,34125725-34125789,34125878-34126085,
34126819-34126911,34127302-34127389,34127788-34128060
Length = 270
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 71 PDWWKGKCLGKIGYFPS----KYCTKLQAGERPLQVTHNLQVSDGD 112
P W K +G+ Y PS C + ERP + + N Q++DGD
Sbjct: 27 PSWTKA--MGRCRYEPSPRRLSSCRRAAKNERPWRSSSNEQLTDGD 70
>01_06_1260 - 35820781-35821161,35821163-35821420,35821524-35821976
Length = 363
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 185 WSERNWSKYNNGSSPTYVRSGYDKYDSYIGNDSTGLDEDGHRVYADGMWWWQRP 238
+S +S Y +GS+ + V S Y+ Y D + +G WWW+ P
Sbjct: 279 YSAAGYSDYRSGSNSSSVNSCYN----YNRKDGAATEASVVGGSDNGEWWWRAP 328
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.135 0.430
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,802,169
Number of Sequences: 37544
Number of extensions: 391211
Number of successful extensions: 836
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 829
Number of HSP's gapped (non-prelim): 11
length of query: 294
length of database: 14,793,348
effective HSP length: 81
effective length of query: 213
effective length of database: 11,752,284
effective search space: 2503236492
effective search space used: 2503236492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)
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