GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000406-TA|BGIBMGA000406-PA|IPR001452|Src homology-3
         (294 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y17702-1|CAA76822.2|  260|Anopheles gambiae putative gVAG protei...    24   5.9  
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    24   5.9  

>Y17702-1|CAA76822.2|  260|Anopheles gambiae putative gVAG protein
           precursor protein.
          Length = 260

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 234 WWQRPLGVRRDHCQRCGASSSKRPL 258
           WW   L  R +H ++  +S S +P+
Sbjct: 157 WWSEYLDARPEHVRKYPSSYSGKPI 181


>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-containing
            phosphoprotein protein.
          Length = 1200

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 16/66 (24%), Positives = 26/66 (39%)

Query: 96   GERPLQVTHNLQVSDGDNGLMLLRDQIVIQVGDEVDGMVMIRSGDNRQGVCPIKFLQEKR 155
            G++  Q   +  +S    G +L +  +     D  D  + I SGD   G       + KR
Sbjct: 990  GQKKRQKAMDEGLSQKQKGRILSKATVSTSESDSDDSRLKIASGDESGGESGAPATKRKR 1049

Query: 156  GSLTDE 161
               +DE
Sbjct: 1050 RIASDE 1055


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.135    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 310,216
Number of Sequences: 2123
Number of extensions: 12945
Number of successful extensions: 34
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 2
length of query: 294
length of database: 516,269
effective HSP length: 64
effective length of query: 230
effective length of database: 380,397
effective search space: 87491310
effective search space used: 87491310
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)