GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000406-TA|BGIBMGA000406-PA|IPR001452|Src homology-3
         (294 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   4.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.3  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   7.4  
DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    21   9.8  
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    21   9.8  
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    21   9.8  
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    21   9.8  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   9.8  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   9.8  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   9.8  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   9.8  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 207 DKYDSYIGNDSTG 219
           DKYD+Y GN  +G
Sbjct: 427 DKYDAYYGNRFSG 439


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/41 (29%), Positives = 16/41 (39%)

Query: 7   PDEPDKXXXXXXXXXXXXXVKQQSKHQRLLPTNLYVILYNF 47
           PD P +             VK    H R LP +L ++L  F
Sbjct: 781 PDVPIELQIQKQSHTPNGIVKTWIAHDRYLPNSLRILLKRF 821


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 96  GERPLQVTHNLQVSDGDNGLMLLRDQIVIQV 126
           GE+  Q   +L +  G NG++L   ++  QV
Sbjct: 312 GEKKRQAFLDLLIEAGQNGVLLTDKEVKEQV 342


>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 189 NWSKYNNGSSPTYVRSGY 206
           N++ YNN   P Y    Y
Sbjct: 90  NYNNYNNNYKPLYYNINY 107


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 189 NWSKYNNGSSPTYVRSGY 206
           N++ YNN   P Y    Y
Sbjct: 90  NYNNYNNNYKPLYYNINY 107


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 189 NWSKYNNGSSPTYVRSGY 206
           N++ YNN   P Y    Y
Sbjct: 90  NYNNYNNNYKPLYYNINY 107


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 189 NWSKYNNGSSPTYVRSGY 206
           N++ YNN   P Y    Y
Sbjct: 90  NYNNYNNNYKPLYYNINY 107


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 189 NWSKYNNGSSPTYVRSGY 206
           N++ YNN   P Y    Y
Sbjct: 323 NYNNYNNNYKPLYYNINY 340


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 189 NWSKYNNGSSPTYVRSGY 206
           N++ YNN   P Y    Y
Sbjct: 323 NYNNYNNNYKPLYYNINY 340


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 189 NWSKYNNGSSPTYVRSGY 206
           N++ YNN   P Y    Y
Sbjct: 323 NYNNYNNNYKPLYYNINY 340


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 189 NWSKYNNGSSPTYVRSGY 206
           N++ YNN   P Y    Y
Sbjct: 312 NYNNYNNNYKPLYYNINY 329


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.135    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,349
Number of Sequences: 429
Number of extensions: 3651
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 11
length of query: 294
length of database: 140,377
effective HSP length: 57
effective length of query: 237
effective length of database: 115,924
effective search space: 27473988
effective search space used: 27473988
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)