Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000406-TA|BGIBMGA000406-PA|IPR001452|Src homology-3
(294 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g18060.1 68417.m02687 SH3 domain-containing protein 3 (SH3P3)... 43 3e-04
At4g34660.1 68417.m04921 SH3 domain-containing protein 2 (SH3P2)... 34 0.13
At1g66220.1 68414.m07516 subtilase family protein contains simil... 32 0.40
At4g21326.1 68417.m03081 subtilase family protein contains simil... 31 0.92
At2g25790.1 68415.m03095 leucine-rich repeat transmembrane prote... 30 2.1
At4g26330.1 68417.m03786 subtilase family protein contains simil... 29 2.8
At3g48230.1 68416.m05262 expressed protein several hypothetical ... 29 2.8
At4g39020.1 68417.m05527 SH3 domain-containing protein similar t... 28 6.5
At4g21740.1 68417.m03147 expressed protein 28 6.5
At3g53980.2 68416.m05965 protease inhibitor/seed storage/lipid t... 28 6.5
At3g53980.1 68416.m05964 protease inhibitor/seed storage/lipid t... 28 6.5
At1g66250.1 68414.m07521 glycosyl hydrolase family 17 protein si... 28 6.5
At5g36060.1 68418.m04344 hypothetical protein 28 8.5
At4g03975.1 68417.m00562 hypothetical protein 28 8.5
>At4g18060.1 68417.m02687 SH3 domain-containing protein 3 (SH3P3)
nearly identical to SH3 domain-containing protein 3
[Arabidopsis thaliana] GI:16974680; contains Pfam
profile PF00018: SH3 domain
Length = 351
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 43 ILYNFKSRHADELDLKAGYKVTVIDTSDPDWWKGKCLGKIGYFPSKYCTKLQ 94
+++ F + ELDL G + V S W +G+C GK G+FP Y K Q
Sbjct: 288 VIHPFSAASEKELDLDKGDYIVVRKVSQTGWAEGECKGKAGWFPMAYIEKRQ 339
>At4g34660.1 68417.m04921 SH3 domain-containing protein 2 (SH3P2)
nearly identical to SH3 domain-containing protein 2
[Arabidopsis thaliana] GI:16974678; contains Pfam
profile PF00018: SH3 domain
Length = 368
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 54 ELDLKAGYKVTVIDTSDPDWWKGKCLGKIGYFPSKY 89
EL L G V V + W +G+C GK G+FP Y
Sbjct: 317 ELSLSTGEYVVVRKVTGSGWAEGECKGKAGWFPYGY 352
>At1g66220.1 68414.m07516 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]; contains Pfam profiles: PF00082 Subtilase
family (3 copies)
Length = 753
Score = 32.3 bits (70), Expect = 0.40
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 71 PDWWKGKCLGKIGYFPSKYCTKLQAGERPLQVTHNLQVSDG 111
P WKGKCL G+ K+C K G L V ++++DG
Sbjct: 169 PKRWKGKCLSGNGFDAKKHCNKKLIGAEYLTV-GLMEMTDG 208
>At4g21326.1 68417.m03081 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]
Length = 690
Score = 31.1 bits (67), Expect = 0.92
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 71 PDWWKGKCLGKIGYFPSKYCTKLQAGER 98
P WKGKC+ + P+K+C K G +
Sbjct: 110 PKHWKGKCVAGEDFDPAKHCNKKLVGAK 137
>At2g25790.1 68415.m03095 leucine-rich repeat transmembrane
protein kinase, putative
Length = 960
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 32 HQRLLPTNLYVILYNFKSRHADELDLKAGYKVTVID 67
H L T L+ + NF HA+EL+L +K ++ D
Sbjct: 9 HPPYLITTLFFLFLNFSCLHANELELLLSFKSSIQD 44
>At4g26330.1 68417.m03786 subtilase family protein contains
similarity to SBT1, a subtilase from tomato plants
GI:1771160 from [Lycopersicon esculentum]
Length = 746
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 71 PDWWKGKCLGKIGYFPSKYCTKLQAGER 98
P W GKC+G + PS +C + G R
Sbjct: 131 PSSWNGKCVGGEDFDPSVHCNRKLIGAR 158
>At3g48230.1 68416.m05262 expressed protein several hypothetical
proteins - Arabidopsis thaliana contains Pfam profile
PF03080: Arabidopsis proteins of unknown function
Length = 373
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 67 DTSDPDWWKGKCLGKIGYFPSKYCTKLQAGERPL 100
DT D +WW IGY+P++ T L G L
Sbjct: 249 DTKDGNWWLSIDSSVIGYWPARLFTHLAHGPATL 282
>At4g39020.1 68417.m05527 SH3 domain-containing protein similar to
SH3 domain-containing protein 2 [Arabidopsis thaliana]
GI:16974678; contains Pfam profile PF00018: SH3 domain
Length = 169
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 43 ILYNFKSRHADELDLKAGYKVTVIDTSDPDWWKGKCLGKIGYFPSKY 89
+++ +++ EL L G V + + W +G+C G G+F Y
Sbjct: 107 VMFPYQADSDFELSLSVGDYVVIREVVSSVWAEGECKGNAGWFTYIY 153
>At4g21740.1 68417.m03147 expressed protein
Length = 156
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Query: 192 KYNNGSSPTYVRSGYDKYDSYIGNDSTGLDEDGH------RVYADGM---WWWQRPLGVR 242
+Y S PT S K S+ G+ + H ADG WW+ G+R
Sbjct: 43 QYQFSSPPTESHSPPGKMKSFFGDSHSSSPPPSHPQLLPKATAADGGDDDSWWRDGAGIR 102
Query: 243 RDHCQR 248
RDH R
Sbjct: 103 RDHVMR 108
>At3g53980.2 68416.m05965 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
protease inhibitor/seed storage/LTP family domain
PF00234
Length = 114
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 239 LGVRRDHCQRCGASS-SKRPLKMIPCAGTSQD 269
+G D CG SS +K+ PCAG +QD
Sbjct: 17 IGTVVDGAGECGRSSPDNEAMKLAPCAGAAQD 48
>At3g53980.1 68416.m05964 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
protease inhibitor/seed storage/LTP family domain
PF00234
Length = 114
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 239 LGVRRDHCQRCGASS-SKRPLKMIPCAGTSQD 269
+G D CG SS +K+ PCAG +QD
Sbjct: 17 IGTVVDGAGECGRSSPDNEAMKLAPCAGAAQD 48
>At1g66250.1 68414.m07521 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase GI:15150341 from [Camellia
sinensis]
Length = 505
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 180 DSESTWSERNWSKYNNGSSPTYVRSGYDKYDSYIGNDST 218
D+++ SE+NW +N P YV S + ND+T
Sbjct: 327 DTKAGLSEKNWGLFNANGEPVYVLR-LTNSGSVLANDTT 364
>At5g36060.1 68418.m04344 hypothetical protein
Length = 165
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 222 EDGHRVYADGMWWWQRPLGVRRDHCQRCGASSSKR 256
EDG V DG +W Q + C RC + + KR
Sbjct: 125 EDGGWVQIDGAYWAQPRVRESIPRCSRCKSRAHKR 159
>At4g03975.1 68417.m00562 hypothetical protein
Length = 128
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 221 DEDGHRVYADGMWWWQRPLGVRRDHCQRCGASSSK 255
+EDG V DG +W Q + C RC +++ K
Sbjct: 89 EEDGGWVQIDGAYWAQPRVRAMNARCCRCKSAAHK 123
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.135 0.430
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,075,418
Number of Sequences: 28952
Number of extensions: 316395
Number of successful extensions: 715
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 705
Number of HSP's gapped (non-prelim): 14
length of query: 294
length of database: 12,070,560
effective HSP length: 81
effective length of query: 213
effective length of database: 9,725,448
effective search space: 2071520424
effective search space used: 2071520424
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)
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