Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000405-TA|BGIBMGA000405-PA|undefined
         (183 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    25   5.0  
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    25   5.0  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    25   6.7  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   8.8  

>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 17  KSRLLRRQKSTSEIESHR-VQETAFEDERAGD 47
           ++ LL+ Q +T E+E+HR  +ET    +R  D
Sbjct: 195 QNELLKEQLATPEVETHRSKEETILHKDRLFD 226


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 9/33 (27%), Positives = 20/33 (60%)

Query: 80  IRNRDPDLIEFRYSEEEVDQTYQVLKRANEISK 112
           ++N  P++I F  S E +    ++++  +E+SK
Sbjct: 139 VKNDSPEVINFLLSTEIIPLCLRIMENGSELSK 171


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 80   IRNRDPDLIEFRYSEEEVDQTYQ 102
            +R+ D  +++F Y E+ +D T Q
Sbjct: 1051 VRDSDGSIVQFHYGEDSLDVTKQ 1073


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 3/27 (11%)

Query: 80  IRNRDPDLIEFRYSEEEVDQT---YQV 103
           +RN   D+I+F Y E+ +D T   YQV
Sbjct: 862 VRNAMGDIIQFAYGEDGLDATLVEYQV 888


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.130    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 495,861
Number of Sequences: 5004
Number of extensions: 14902
Number of successful extensions: 38
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 4
length of query: 183
length of database: 2,362,478
effective HSP length: 69
effective length of query: 114
effective length of database: 2,017,202
effective search space: 229961028
effective search space used: 229961028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)