Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000405-TA|BGIBMGA000405-PA|undefined
         (183 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_26026| Best HMM Match : Vicilin_N (HMM E-Value=0.23)                27   6.9  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  

>SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2835

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/52 (21%), Positives = 27/52 (51%)

Query: 9    PQVGKCQTKSRLLRRQKSTSEIESHRVQETAFEDERAGDGWLPGQRLTKISF 60
            P++ + +  S L++  K   +++       A+++    D WLPG++   ++F
Sbjct: 1928 PEIAETEDLSHLIQWYKCAGQLDVESGHIIAYDNFAVEDKWLPGEQAIDLNF 1979


>SB_26026| Best HMM Match : Vicilin_N (HMM E-Value=0.23)
          Length = 396

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 14  CQTKSRLLRRQKSTSEIESHRVQETAFEDERAGDGW 49
           CQ+  ++  R+ STS         T  +D++  DGW
Sbjct: 351 CQSNQQIDEREPSTSSDSEMASSSTKTDDQQEEDGW 386


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 7/35 (20%), Positives = 21/35 (60%)

Query: 2    NVHTDCMPQVGKCQTKSRLLRRQKSTSEIESHRVQ 36
            ++H +C+  + +C+   + L  +  +SE++  R++
Sbjct: 4614 DIHKECVTWLSRCEESLKKLEDESQSSELQQERIR 4648


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.130    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,837,977
Number of Sequences: 59808
Number of extensions: 116354
Number of successful extensions: 254
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 251
Number of HSP's gapped (non-prelim): 3
length of query: 183
length of database: 16,821,457
effective HSP length: 78
effective length of query: 105
effective length of database: 12,156,433
effective search space: 1276425465
effective search space used: 1276425465
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)