GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000405-TA|BGIBMGA000405-PA|undefined
         (183 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0276 - 14489847-14489921,14490144-14490240,14491480-144915...    30   1.3  

>01_03_0276 -
           14489847-14489921,14490144-14490240,14491480-14491546,
           14491748-14491877,14491995-14492152,14493004-14493235,
           14493760-14493895,14493982-14494085,14495709-14495987
          Length = 425

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 13  KCQTKSRLLRRQKSTSEIESHRVQETAFEDERAGDGWLPGQ 53
           K QTKSRL   ++  ++I S    E+   D++  +G  PG+
Sbjct: 344 KAQTKSRLKAEERFKADIVSPEQWESWIRDQQESEGVTPGE 384


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.130    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,575,315
Number of Sequences: 37544
Number of extensions: 110886
Number of successful extensions: 241
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 240
Number of HSP's gapped (non-prelim): 1
length of query: 183
length of database: 14,793,348
effective HSP length: 78
effective length of query: 105
effective length of database: 11,864,916
effective search space: 1245816180
effective search space used: 1245816180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)