GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000405-TA|BGIBMGA000405-PA|undefined
         (183 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    24   2.4  
CR954256-2|CAJ14143.1|  295|Anopheles gambiae cyclin protein.          24   3.2  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    22   9.8  

>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
            differentiation regulator protein.
          Length = 1283

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 93   SEEEVDQTYQVLKRANEISK--PGGGGPVVRV 122
            S    D+T  V+KR+   S    GGG P +RV
Sbjct: 1003 STSSADETGGVIKRSGSSSPGGTGGGSPAMRV 1034


>CR954256-2|CAJ14143.1|  295|Anopheles gambiae cyclin protein.
          Length = 295

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 11  VGKCQTKSRLLRRQKSTSEIESHRVQE 37
           VGK Q+ S+L    K+T   +S RVQ+
Sbjct: 160 VGKTQSYSKLYLLLKATLSAQSFRVQK 186


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 24  QKSTSEIESHRVQETAFEDERAGD 47
           +K   E++   V+  AFE+E AG+
Sbjct: 344 KKLVDELQEVEVKRAAFENEVAGE 367


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.315    0.130    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,517
Number of Sequences: 2123
Number of extensions: 3892
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 3
length of query: 183
length of database: 516,269
effective HSP length: 60
effective length of query: 123
effective length of database: 388,889
effective search space: 47833347
effective search space used: 47833347
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)