GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000405-TA|BGIBMGA000405-PA|undefined
         (183 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68920.1 68414.m07887 basic helix-loop-helix (bHLH) family pr...    27   9.9  

>At1g68920.1 68414.m07887 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 486

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 16  TKSRLLRRQKSTSEIESHRVQETAFEDERAGD 47
           TK R    QK++   +SHR Q++  E +  GD
Sbjct: 235 TKKRKRNGQKNSEAAQSHRSQQSEEEPDNNGD 266


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.130    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,713,241
Number of Sequences: 28952
Number of extensions: 84194
Number of successful extensions: 210
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 1
length of query: 183
length of database: 12,070,560
effective HSP length: 77
effective length of query: 106
effective length of database: 9,841,256
effective search space: 1043173136
effective search space used: 1043173136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)