Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000404-TA|BGIBMGA000404-PA|undefined
         (470 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr...    36   0.061
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos...    33   0.57 
AF002197-6|AAD34661.1|  446|Caenorhabditis elegans Hypothetical ...    33   0.57 
Z81539-4|CAB04392.2|  208|Caenorhabditis elegans Hypothetical pr...    31   2.3  
AL161712-22|CAC70129.2|  729|Caenorhabditis elegans Hypothetical...    31   2.3  
AF099925-17|AAO38624.1|  462|Caenorhabditis elegans Calcium bind...    31   2.3  
AF099925-16|AAC69511.1|  482|Caenorhabditis elegans Calcium bind...    31   2.3  
AF099925-15|AAC69510.2|  585|Caenorhabditis elegans Calcium bind...    31   2.3  
AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    31   2.3  
Z81583-4|CAB04669.1|  323|Caenorhabditis elegans Hypothetical pr...    30   4.0  
AC024810-9|AAF60766.1|  547|Caenorhabditis elegans Hypothetical ...    30   4.0  
Z68105-3|CAA92121.2|  442|Caenorhabditis elegans Hypothetical pr...    29   5.3  
U12965-3|AAZ32811.1|  980|Caenorhabditis elegans Hypothetical pr...    29   5.3  
Z50794-6|CAA90660.1| 1139|Caenorhabditis elegans Hypothetical pr...    29   7.1  
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr...    29   7.1  
AL110500-16|CAD92405.1|  356|Caenorhabditis elegans Hypothetical...    29   7.1  
AF170122-1|AAD47840.1| 1139|Caenorhabditis elegans liprin-alpha ...    29   7.1  
Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical pr...    29   9.3  
X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    29   9.3  
U53342-6|AAA96218.1|  466|Caenorhabditis elegans Hypothetical pr...    29   9.3  
AF077542-2|AAC26294.1|  244|Caenorhabditis elegans Hypothetical ...    29   9.3  

>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
            F58G4.1 protein.
          Length = 1974

 Score = 35.9 bits (79), Expect = 0.061
 Identities = 31/139 (22%), Positives = 62/139 (44%), Gaps = 5/139 (3%)

Query: 136  EQLRKDAQDLETQIKLLQDGLDSLARHQNRGLENSVYSKVNEIQEDMSIKKYEYRATQLH 195
            E L+K   DLET IK  Q+       HQ R L++ + S+   I +    KK++    +  
Sbjct: 958  EGLKKTVSDLETTIKK-QESEKQAKDHQIRSLQDEIQSQDEVISKLNKEKKHQEEVNRKL 1016

Query: 196  LAAVRAQGHVEIQLN--RSILLIVIDAVAKKMNKKNGYQSDDDNIRYKL--NTQYFNNNL 251
            L  ++A+      LN  ++ L   +D +   + ++   + D +  R K+    +     +
Sbjct: 1017 LEDIQAEEDKVNHLNKTKAKLESTLDELEDTLEREKRGRQDCEKQRRKVEGELKIAQELI 1076

Query: 252  KSPNKHKKEKQNFFDDDEV 270
            +  N+HK E++      ++
Sbjct: 1077 EELNRHKHEQEQVIKKKDI 1095


>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
           protein 1 protein.
          Length = 1963

 Score = 32.7 bits (71), Expect = 0.57
 Identities = 29/146 (19%), Positives = 71/146 (48%), Gaps = 10/146 (6%)

Query: 174 KVNEIQEDMSIKKYEYRATQLHLAAVRAQGHVEIQLNRSILLIVIDAVAKKMNKKNGYQS 233
           +V    +++  K  E RAT+  L  +      E +     +++    + +++ +++   +
Sbjct: 845 QVTRTDDEIRAKDDELRATKERLLKMEHDFR-ENEKKLDQVIVERAVIQEQLQQESENSA 903

Query: 234 DDDNIRYKLNT-----QYFNNNLKSPNKHKKEKQNFFDDDEVRYKFPTVLNRTKPAENKP 288
           + D+IR +L T     +Y  N+++     ++E+QN  ++DE R +  TV +  +  E + 
Sbjct: 904 ELDDIRGRLQTRNQELEYIVNDMRD-RLSEEEQQNEKNNDERRKQMETVRDLEEQLEQEE 962

Query: 289 KPKQKIKVNFWSNKQTSNRLHNVDPK 314
           + +QK+ ++         RL N++ +
Sbjct: 963 QARQKLLLD---KTNVDQRLRNLEER 985


>AF002197-6|AAD34661.1|  446|Caenorhabditis elegans Hypothetical
           protein F20H11.4 protein.
          Length = 446

 Score = 32.7 bits (71), Expect = 0.57
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 252 KSPNKHKKEKQNFFDDDEVRYKFPTVLNRTKPAENKPKPKQKIKVNFWSNKQTSNRLHNV 311
           KS N  K+EK  F D  E + K P   +  K  E+K + K++ K     NK++ NR   +
Sbjct: 36  KSRNPEKEEKSKFKDLKEEKSKVP---DDGKKQEDKKEVKKEEKKKDEKNKKSKNRKSKM 92

Query: 312 DPKSKT 317
            P   T
Sbjct: 93  KPPPDT 98


>Z81539-4|CAB04392.2|  208|Caenorhabditis elegans Hypothetical
           protein F46A8.6 protein.
          Length = 208

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 363 LTIQLNEEEANDLGEDLNQAFVNNGTKVSKRKSLNSENQMSTKHKKKQDSEPRI 416
           +T+ + E + +D+G D  +  ++N  K  K+KS     + + K KK  DS  ++
Sbjct: 43  MTMSMREAQVSDVGPDSTRTAMDNQKKSKKKKS----KEPAKKKKKSADSSQKV 92


>AL161712-22|CAC70129.2|  729|Caenorhabditis elegans Hypothetical
           protein Y66D12A.5 protein.
          Length = 729

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 226 NKKNGYQSDDDNIRY--KLNTQYFNNNLKSPNKHKKEKQNFFDDDEVRYKFPTVLNRTKP 283
           NK+N     ++NI    +   Q         ++H KE+Q   DDDE  + F  + +   P
Sbjct: 4   NKENPLVPSEENIIEWCEKEAQRLERKKCEASEHVKEEQKLSDDDENDFHFEELESPPPP 63

Query: 284 AENKPK 289
            E  PK
Sbjct: 64  REPSPK 69


>AF099925-17|AAO38624.1|  462|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform c protein.
          Length = 462

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 345 PSPIFSENHIP---MVTVPDDLTIQLNEEEANDLGEDLNQAFVNNGTKVS 391
           PSP   EN +P   +++   D+++ +NE+   D+ E    AFV++G   S
Sbjct: 37  PSPEIEENTVPPPRVISPRVDVSVDVNEDGVLDIDEIRYAAFVHHGLSAS 86


>AF099925-16|AAC69511.1|  482|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform b protein.
          Length = 482

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 345 PSPIFSENHIP---MVTVPDDLTIQLNEEEANDLGEDLNQAFVNNGTKVS 391
           PSP   EN +P   +++   D+++ +NE+   D+ E    AFV++G   S
Sbjct: 37  PSPEIEENTVPPPRVISPRVDVSVDVNEDGVLDIDEIRYAAFVHHGLSAS 86


>AF099925-15|AAC69510.2|  585|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform a protein.
          Length = 585

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 345 PSPIFSENHIP---MVTVPDDLTIQLNEEEANDLGEDLNQAFVNNGTKVS 391
           PSP   EN +P   +++   D+++ +NE+   D+ E    AFV++G   S
Sbjct: 37  PSPEIEENTVPPPRVISPRVDVSVDVNEDGVLDIDEIRYAAFVHHGLSAS 86


>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 345 PSPIFSENHIP---MVTVPDDLTIQLNEEEANDLGEDLNQAFVNNGTKVS 391
           PSP   EN +P   +++   D+++ +NE+   D+ E    AFV++G   S
Sbjct: 37  PSPEIEENTVPPPRVISPRVDVSVDVNEDGVLDIDEIRYAAFVHHGLSAS 86


>Z81583-4|CAB04669.1|  323|Caenorhabditis elegans Hypothetical
           protein T02G6.4 protein.
          Length = 323

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 207 IQLNRSILLIVIDAVAKKMNKKNGYQSDDDNIRYKLNTQY-FNNNLKSPNKHKKEKQNFF 265
           I+LN S  +I+   + K      G  + +    Y L   + F +  ++P KHK  K  F 
Sbjct: 36  IKLNSSCAVIINTLINKVSQDHLGIHAINSRTEYFLKKSFVFKSIFQNPTKHKNLKIQFL 95

Query: 266 DDDEVRYKFP 275
            + + + K P
Sbjct: 96  SNFDFQIKSP 105


>AC024810-9|AAF60766.1|  547|Caenorhabditis elegans Hypothetical
           protein Y54E10A.12 protein.
          Length = 547

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 1/87 (1%)

Query: 357 VTVPDDLTIQLNEEEANDLGEDLNQAFVNNGTKVSKRKSLNSENQMSTKHKKKQDSEPRI 416
           +T+P D TIQ   E+  +L + L +  + + +   ++ S         K K K + +  +
Sbjct: 110 ITLPYDATIQKIAEKEKNLSKLLKELSIVDSSLKEEKASFEKTQSALLKEKGKIEKDKLM 169

Query: 417 QGNETELEFFSKYVVQKLRKMETNQRI 443
              E + +      VQK +++E+ +R+
Sbjct: 170 LREEAQKQASMNAEVQK-KELESQERL 195


>Z68105-3|CAA92121.2|  442|Caenorhabditis elegans Hypothetical
           protein F13E6.4 protein.
          Length = 442

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 21/107 (19%), Positives = 48/107 (44%), Gaps = 10/107 (9%)

Query: 349 FSENHIPMVTVPDDLTIQLNEEEANDLGEDLNQAFVN----NGTKVSKRKSLNSENQMST 404
           + ++H    T  DD  ++  E+    LGE++ Q   N    NG       S++   QM  
Sbjct: 220 YFKDHNSKTTTWDDPRLKQQEQTGFGLGENIGQNRYNNCYDNGHSSRSLPSIHQHQQMIP 279

Query: 405 KHKKKQDSEPRIQGNETELEFFSKYVVQKLRKMETNQRIYSENLINT 451
            H + Q S      ++ ++++  +   +++   E N ++ +  L+++
Sbjct: 280 NHPQPQYS------SQQQMDYIQQLQNERMMIQEKNAQLINSGLVDS 320


>U12965-3|AAZ32811.1|  980|Caenorhabditis elegans Hypothetical
           protein F23F12.8 protein.
          Length = 980

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 369 EEEANDLGEDLNQAFVNNGTKVSKRKSLNSENQMSTKHKKKQDSEPRIQGNETELEFFSK 428
           E+      E+LN+  +    K +K+K +  +N+     K+ +D +  I   E E    ++
Sbjct: 505 EQREQQEAEELNRMIIEKEMKENKQKMIEEKNKRKMLEKEMEDRQNAIY--EEEERRIAE 562

Query: 429 YVVQKLRKMETNQRIYSENLINT 451
              +K  ++E  +RI  + +I T
Sbjct: 563 EERRKQIEIEERRRIQQQIMIAT 585


>Z50794-6|CAA90660.1| 1139|Caenorhabditis elegans Hypothetical
           protein F59F5.6 protein.
          Length = 1139

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 362 DLTIQLNEEEANDLGEDLNQAFVNNGTKVSKRKSLNS---ENQ-----MSTKHKKKQDSE 413
           D  ++LNEE+ + L E L  A       + K +SL S   E Q     ++   +K   +E
Sbjct: 344 DAAVRLNEEKVHSLQERLELAEKQLAQSLKKAESLPSVEAELQQRMEALTAAEQKSVSAE 403

Query: 414 PRIQGNETELEFFSKYVVQKLRKMETNQRIYSENLINTV 452
            RIQ  +  ++  S  + + +++   N+  +S+ L +TV
Sbjct: 404 ERIQRLDRNIQELSAELERAVQRERMNEE-HSQRLSSTV 441


>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical
           protein F21C10.7 protein.
          Length = 2541

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 5/96 (5%)

Query: 362 DLTIQLNEEEANDLGE---DLNQAFVNNGTKVSKRKSLNSENQMSTKHKKKQDSEPRIQG 418
           D T   + +EAN+L +   DL Q   +   ++ + K ++   +   K ++ +  + +++ 
Sbjct: 810 DRTQPASIQEANELIDRVHDLQQTIEHKSARIQEVKKMSQVPEFVHKMEEVEHVQEQLKH 869

Query: 419 NETELEFFSKYVVQKLRKMETNQRIYSENLINTVLM 454
              ELE   K   QKL K+  + +++ E +I  + M
Sbjct: 870 LTVELE--EKLEQQKLVKVTEHIQMWQEEMIEIIKM 903


>AL110500-16|CAD92405.1|  356|Caenorhabditis elegans Hypothetical
           protein Y87G2A.16 protein.
          Length = 356

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 276 TVLNRTKPAENKPKPKQKIKVNFWSNKQTSNRLHNVDPKSKTN 318
           T++N T      PK  +  K+  W  +++  RL+N++   + N
Sbjct: 32  TLINATSSTIKPPKTPKFYKILNWEKRESEKRLNNIEALIRAN 74


>AF170122-1|AAD47840.1| 1139|Caenorhabditis elegans liprin-alpha
           homolog SYD-2 protein.
          Length = 1139

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 362 DLTIQLNEEEANDLGEDLNQAFVNNGTKVSKRKSLNS---ENQ-----MSTKHKKKQDSE 413
           D  ++LNEE+ + L E L  A       + K +SL S   E Q     ++   +K   +E
Sbjct: 344 DAAVRLNEEKVHSLQERLELAEKQLAQSLKKAESLPSVEAELQQRMEALTAAEQKSVSAE 403

Query: 414 PRIQGNETELEFFSKYVVQKLRKMETNQRIYSENLINTV 452
            RIQ  +  ++  S  + + +++   N+  +S+ L +TV
Sbjct: 404 ERIQRLDRNIQELSAELERAVQRERMNEE-HSQRLSSTV 441


>Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical
           protein C46F11.4 protein.
          Length = 811

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 17/87 (19%), Positives = 38/87 (43%)

Query: 226 NKKNGYQSDDDNIRYKLNTQYFNNNLKSPNKHKKEKQNFFDDDEVRYKFPTVLNRTKPAE 285
           +KK   ++D D    + +   F    K  +++  E+  + +D  + + +  V++     +
Sbjct: 157 SKKGLGRADIDEEDMQESLFKFMEEYKEKHENDDEQLEYDEDGNIIWSWKKVIDPLPDID 216

Query: 286 NKPKPKQKIKVNFWSNKQTSNRLHNVD 312
           +     QK   NF+   +   RLH +D
Sbjct: 217 HSQIQYQKFNKNFYEEHEDIKRLHYMD 243


>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 7/111 (6%)

Query: 222 AKKMNKKNGYQS---DDDNIRYKLNTQYFNNNLKSPNKHKKEKQNFFDDDEVRYKFPTVL 278
           +KK NKK   +S   DD+     ++ +     + S ++ ++E +    DDE   K     
Sbjct: 102 SKKNNKKKAQESSEDDDEESEGDVSEEDVKPQIHSDDELEEEDEAPTTDDEEEQKRKEKE 161

Query: 279 NRTKPAENKPKPKQKIKVNFWSNK----QTSNRLHNVDPKSKTNRRHTVGA 325
            R K    K K K+K ++   + K       +     D K+K  +R + GA
Sbjct: 162 RRKKEKREKKKRKEKKRLEKENRKIKEEDDEDSDDEDDEKAKKKKRKSKGA 212


>U53342-6|AAA96218.1|  466|Caenorhabditis elegans Hypothetical
           protein F01G12.6 protein.
          Length = 466

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 9/114 (7%)

Query: 358 TVPDDLTIQLNEEEANDLGEDLNQAFVNNGTKVSKRK--SLNSENQMSTKHKKKQDSEPR 415
           T   D  I + E E   +G  + +A      K  ++K   L ++N + T   K+QD E +
Sbjct: 249 TEETDNCISVRELEDQLMGVRIKEADTLAELKEMRQKVMELETQNHVCTNQLKRQDEEMK 308

Query: 416 IQGNETELEFFSKYVVQKLRKMETNQRIYSENLINTVLMLGQLGKLNGKSKIAE 469
               ++E+      +V+K +++E   +   E L N      + G++N + K +E
Sbjct: 309 RVREDSEV------LVKKRKELEDQLKDEKEKLDNKESEFNE-GRINDRLKYSE 355


>AF077542-2|AAC26294.1|  244|Caenorhabditis elegans Hypothetical
           protein Y57G7A.5 protein.
          Length = 244

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 146 ETQIKLLQDGLDSLARHQ--NRGLENSVYSKVNEIQEDMSIKKYEYRATQLHLAAVRAQG 203
           E ++K L+D + SL      + G  +SV SK + I+ +  +K Y+   T+L    VR   
Sbjct: 130 EMELKDLRDNIRSLRSELTVDVGPVSSVTSKTSGIEANFIVKPYKPLETELATQIVRVNR 189

Query: 204 HVEI 207
            +EI
Sbjct: 190 ELEI 193


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.313    0.128    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,833,758
Number of Sequences: 27539
Number of extensions: 456736
Number of successful extensions: 1601
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1595
Number of HSP's gapped (non-prelim): 27
length of query: 470
length of database: 12,573,161
effective HSP length: 84
effective length of query: 386
effective length of database: 10,259,885
effective search space: 3960315610
effective search space used: 3960315610
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)