Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000404-TA|BGIBMGA000404-PA|undefined
(470 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 32 0.15
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 31 0.35
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 30 0.61
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 30 0.80
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 29 1.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 1.8
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 29 1.8
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 29 1.8
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 29 1.8
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 28 2.4
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch... 27 4.3
SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 4.3
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 27 5.6
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 27 5.6
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 27 5.6
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 27 5.6
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 27 7.5
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 26 9.9
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 9.9
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 9.9
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 26 9.9
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 32.3 bits (70), Expect = 0.15
Identities = 49/250 (19%), Positives = 94/250 (37%), Gaps = 17/250 (6%)
Query: 210 NRSILLIVIDAVAKKMNKKNGYQSDDDNIRYKLNTQYFNNNLKSPNKHKKEKQNFFDDDE 269
N +++ I + + + DD L+ + LK + ++ +D+DE
Sbjct: 124 NDNLVKITAGTIISDIMDEPVVDEDDKLSEEDLSKEDLETTLKGDENYSSSQKEIYDNDE 183
Query: 270 VRYKFPT----VLNRTKPAENKPKPKQKIKVNFWSNKQTSNRLHNVDPKSKTNRRHTVGA 325
K P+ + + EN + QTS+ + + +++ + H V
Sbjct: 184 TIPKPPSPEVEKIETSTSVENAYITNSQYNDTLDMEDQTSDLITTFEHENEDHEVHEV-- 241
Query: 326 PNLXXXXXXXXXXXXXXFLPS-PIFSENHIPMVTVPDDLTIQ----LNEEEANDLGEDLN 380
P++ + F+ + + + T P ++ I +++ E + D
Sbjct: 242 PSIHGMEGTFETVNLTSEAGNEKEFNNDSVVLNTTPKEMQISSLDAVDKLEDKPVSNDNI 301
Query: 381 QAFVNNGTKVSKRKS-LNSENQMSTKHKKKQDSEPRIQGNETELEFF-SKYVVQKLRKME 438
+A + + T V + S L SEN ST Q+S G L+F SK V +
Sbjct: 302 KANIESSTTVDRASSQLESENNESTFFVHNQNS----SGQHQTLDFVASKPVTDTPELSK 357
Query: 439 TNQRIYSENL 448
N + SENL
Sbjct: 358 ENTLVSSENL 367
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 31.1 bits (67), Expect = 0.35
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 394 KSLNSENQMSTKHKKKQDSEPRIQGNETELEFFSKYVVQKLRKMETNQRIYSENLIN-TV 452
K N+E S +DSE I NET LE S +V ++ + + YSE++ N TV
Sbjct: 945 KEANNEQAQSISRSLIKDSEGSINTNET-LE--STSIVNEIEESAVQTKSYSESMWNKTV 1001
Query: 453 LMLGQLGKL 461
M L +L
Sbjct: 1002 TMFPSLQEL 1010
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 30.3 bits (65), Expect = 0.61
Identities = 18/79 (22%), Positives = 34/79 (43%)
Query: 344 LPSPIFSENHIPMVTVPDDLTIQLNEEEANDLGEDLNQAFVNNGTKVSKRKSLNSENQMS 403
L P +S+ + P DL + + +E N+ E+L T + K + + + Q+
Sbjct: 604 LDDPTYSDEEEVLFAPPGDLQLSESIDELNNNIEELKAQLNAINTLIKKAELVADQKQLK 663
Query: 404 TKHKKKQDSEPRIQGNETE 422
+ K Q+ E I E +
Sbjct: 664 SLTKNHQEIEKAIHRKERQ 682
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 29.9 bits (64), Expect = 0.80
Identities = 11/56 (19%), Positives = 30/56 (53%)
Query: 386 NGTKVSKRKSLNSENQMSTKHKKKQDSEPRIQGNETELEFFSKYVVQKLRKMETNQ 441
NG +++ +K +++E + + KHK + P I N+ ++ ++ ++ ++ Q
Sbjct: 560 NGREITVKKIIDAEIEWARKHKIPEPQLPNIDYNDRPRRLIVEFAIENIQVVKRRQ 615
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/66 (22%), Positives = 33/66 (50%)
Query: 377 EDLNQAFVNNGTKVSKRKSLNSENQMSTKHKKKQDSEPRIQGNETELEFFSKYVVQKLRK 436
E+L+ A N+ KRK+L +EN + + ++ E ++ + +LE + + +
Sbjct: 80 EELDSANSNDAGSSRKRKNLPNENTQDSTSESSEEEEDGLESYQKQLEGLKEKDPEFYKF 139
Query: 437 METNQR 442
+E N +
Sbjct: 140 LEQNDQ 145
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 28.7 bits (61), Expect = 1.8
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 14/119 (11%)
Query: 343 FLPSPIFSENHIPMVTVPD---DLTIQLNEEEANDLGEDLNQAFVNN------GTKVSKR 393
++P F +P++TV L E + ++ E LN VN+ T++S
Sbjct: 2742 YVPDKPFDPALLPLLTVESLRHYLESLYKESQILEIAESLNSGKVNSVMRRLVSTEISNT 2801
Query: 394 KSLNSENQMSTKHKKKQDSEPRIQGNETELEFFSKYVVQKLRKMETNQRIYSENLINTV 452
+++S ST ++ +S I +ELEFF K VV E R+ E+ I V
Sbjct: 2802 PNIDSS--FSTVYRSLNES---IVPLYSELEFFMKSVVLNQYIFELAMRLSKESNIAVV 2855
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 28.7 bits (61), Expect = 1.8
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 144 DLETQIKLLQDGLDSLARHQNR---GLENSVYSKVNEIQEDMSIKKYEYRATQLHLAAVR 200
DLE I L L+ L+ + NR L VY + + ++D S+ Y TQ L VR
Sbjct: 483 DLENPISSLLPALEQLSNYSNREISDLAKDVYKTLIQSKDDYSL-ALSY--TQSDLVPVR 539
Query: 201 AQG 203
QG
Sbjct: 540 GQG 542
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 120 EMLLDRMAGGQARLSYEQLRKDAQDLETQIKLLQDGLDSLARHQ 163
+ML D +AG + E++ K+A D + Q+ L+Q ++ + +
Sbjct: 289 KMLKDFLAGNSKKREEERIAKEAADAQHQLSLVQSWINGYGQEK 332
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/51 (23%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 364 TIQLNEEEANDLGEDLNQAFVNNGTKVSKRKSLNSENQMSTKHKKKQDSEP 414
T ++ ++ ++ +D++ F+ T +S+RKS+ +E + +HK+ +++P
Sbjct: 763 TPEIEKQSTPEILKDVDVDFLKRNTSLSRRKSMPAEIK---RHKESSETKP 810
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 28.3 bits (60), Expect = 2.4
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 410 QDSEPRIQGNETELEFFSKYVVQ-KLRKMETNQRIYSENLINTVLMLGQLGKLNGKSKIA 468
QD+ + GN + E + ++ +L+++E N + ++LINT +LG K G S +A
Sbjct: 239 QDTARQFLGNSSPKEKYQLFMKGIQLKQLEENYSLIEQSLINTKNVLG--NKKTGVSYLA 296
Query: 469 E 469
+
Sbjct: 297 K 297
>SPCC1442.09 |trp3||anthranilate synthase component
I|Schizosaccharomyces pombe|chr 3|||Manual
Length = 489
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 355 PMVTVPDDLTIQLNEEEANDLGEDLNQAFVNN 386
P + +P+ + L E +++GED +AFV+N
Sbjct: 190 PEIPLPEQKKVHLGYEAKSNVGEDGYKAFVSN 221
>SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 27.5 bits (58), Expect = 4.3
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 251 LKSPNKH-KKEKQNFFDDDEVRYKFPTVLNRTKPAENKPKPKQK 293
+K+P K KK K N D + P N K +NK K K+K
Sbjct: 143 VKAPAKESKKRKVNELSQDVISLHSPKESNARKTKKNKNKKKKK 186
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 27.1 bits (57), Expect = 5.6
Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 3/109 (2%)
Query: 185 KKYEYRATQLHLAAVRAQGHVEIQLNRSILLIVIDAVAKKMNKKNGYQSDDDNIRYKLNT 244
K+Y + A Q H R G E + R L + V K+ Y + + +
Sbjct: 30 KQYLFLALQYH--PDRNPGDEERAVKRFQRLQLAHEVLSDATKRLIYDQLF-GLSTRTRS 86
Query: 245 QYFNNNLKSPNKHKKEKQNFFDDDEVRYKFPTVLNRTKPAENKPKPKQK 293
QY N+ +P+KH ++ ++ P KP E+ K +K
Sbjct: 87 QYKPNSTSNPSKHTSAYASYNKGKNSKWSSPFASTTKKPQESSEKYSKK 135
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/68 (22%), Positives = 33/68 (48%)
Query: 377 EDLNQAFVNNGTKVSKRKSLNSENQMSTKHKKKQDSEPRIQGNETELEFFSKYVVQKLRK 436
EDL+ N+G K S + +S+++ K K K+ +P + N L+ + + L+
Sbjct: 35 EDLSMDGSNDGVKDSPDSNDDSQSKKKKKKKLKKSQQPLNEENYPRLQTTENNLQKPLKI 94
Query: 437 METNQRIY 444
+ + ++
Sbjct: 95 SDLQELVF 102
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 27.1 bits (57), Expect = 5.6
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 120 EMLLDRMAGGQARLSYE---QLRKDAQDLETQIKLLQDGLDSLARHQNRGLENSV--YSK 174
E L+ MA Q + + + +L + +L+ Q+K + L + +N LE V SK
Sbjct: 176 EKRLESMAPEQIKEAVKDNVELHAERANLQLQLKRTESLLQK-SEDKNFKLEEKVDYLSK 234
Query: 175 VNEIQEDMSIKKYEYRATQLHLAAVRAQ 202
VN++++ ++K + R L A + Q
Sbjct: 235 VNDVEQSQNVKVFTERIRFLENALEKVQ 262
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/59 (25%), Positives = 31/59 (52%)
Query: 361 DDLTIQLNEEEANDLGEDLNQAFVNNGTKVSKRKSLNSENQMSTKHKKKQDSEPRIQGN 419
+++T + + A+ L D +AFVN+ + R++L S N+ + + K + I G+
Sbjct: 397 EEVTDMTDSDTASGLIFDDTRAFVNSIKETENREALGSINEQAFEDSKDLNDTNSITGS 455
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 26.6 bits (56), Expect = 7.5
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 219 DAVAKKMNKKNGYQSDDDNIRYKLNTQYFNNNLKSPN--KHKKEKQNFFDDDEVRYKFPT 276
D + K + + +S ++ + TQ+ NN PN ++K+++ N DD++ + P+
Sbjct: 136 DTASVKETENSDPKSAENEVLEGETTQHSNNKEAHPNTEENKEQEDNEEDDEDDGWITPS 195
Query: 277 VLNRTKPAEN 286
+ R K AE+
Sbjct: 196 NI-RKKKAED 204
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 9.9
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 390 VSKRKSLNSENQMSTKHKKKQDSEPRIQGNETELEFF-----SKYVVQKLRK 436
+ K SLN++ K +KK +SE + E++ SK +++KLRK
Sbjct: 4 IQKMDSLNNKEGQPDKKRKKHESEKEGENEVLEIDVTKPVPPSKKLMRKLRK 55
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 26.2 bits (55), Expect = 9.9
Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 6/111 (5%)
Query: 115 PVLREEMLLDRMAGGQARLSYEQLRKDAQDLETQIKLLQDGLDSLARHQNRGLENSVY-- 172
P + E+ + GQ + +QL+ L I +DGL + +GL Y
Sbjct: 887 PAKQLEVAIQTYCDGQNLATTQQLKVQIAPLLKIISDYKDGLKVHEYNVIKGLLEEYYNV 946
Query: 173 ----SKVNEIQEDMSIKKYEYRATQLHLAAVRAQGHVEIQLNRSILLIVID 219
S +N+ +ED+ ++ + + A H I ++L+ ++D
Sbjct: 947 EKLFSGINKREEDVILRLRDENKDDVDKVIALALSHSRIGSKNNLLITILD 997
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 9.9
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 221 VAKKMNKKNGYQSDDDNIRYKLNTQYFNNNLKSPNKHKKEKQNFFDDD 268
+A + N +++D + + L F+ + P KH K Q D D
Sbjct: 97 IADLQSTNNDEKNEDHSSKVDLEDPVFHGEIIVPGKHSKNMQVVTDSD 144
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 26.2 bits (55), Expect = 9.9
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 367 LNEEEANDLGEDLNQAFVNNGTKVSKRKSLNSENQMSTKHKKKQDS 412
LN EE + E+L++ F + G V R L + ST+H +S
Sbjct: 878 LNHEEEEQMEEELSEIFSSGGPNVVDRVYL---KKSSTRHTSDNNS 920
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.128 0.352
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,721
Number of Sequences: 5004
Number of extensions: 85520
Number of successful extensions: 306
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 293
Number of HSP's gapped (non-prelim): 26
length of query: 470
length of database: 2,362,478
effective HSP length: 75
effective length of query: 395
effective length of database: 1,987,178
effective search space: 784935310
effective search space used: 784935310
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 55 (26.2 bits)
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