GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000404-TA|BGIBMGA000404-PA|undefined
         (470 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    29   0.27 
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    28   0.63 
AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr...    26   1.9  
AJ439060-13|CAD27764.1|  319|Anopheles gambiae putative transcri...    25   3.3  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    24   7.7  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 29.1 bits (62), Expect = 0.27
 Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 6/156 (3%)

Query: 55  RYESLCAQARAVSS--TADLAHLARTLLTAQPPMKPPKRAFLXXXXXXXXXXXXXXXAES 112
           + ESL  Q   V +  TA+LA L           +  +   +               AES
Sbjct: 433 KIESLTRQKTEVEAKLTANLATLKDETKVLLEEKEKLQTELIELKRAVDESKSALSIAES 492

Query: 113 MPPVLREEMLLDRMAGGQARLSYEQLRKDAQDLETQIKLLQDGLDSLARHQNRGLENSVY 172
              + + + + +R      R SYE+  KD ++   +++ L++ L  + R +    +  + 
Sbjct: 493 ELKICQHDEVTERRKLESLRYSYEETEKDLEEKRARLQTLEEAL-PVTRTELETAKQKLQ 551

Query: 173 SKVNEIQEDMSIKKYEYRATQLHLAAV---RAQGHV 205
              NE +E     +      Q  +AA+   R+QG V
Sbjct: 552 ENANEERELTQTLRAVQGKLQESMAAMQSTRSQGKV 587



 Score = 25.8 bits (54), Expect = 2.5
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 10/86 (11%)

Query: 127 AGGQARLSYEQLRKDAQDLETQIKLLQDGLDSLARHQNRGLENSVYSKVNEI-QEDMSIK 185
           AG  +R   EQ++  AQ+++TQI  LQ+        Q   LE ++     ++ Q++M +K
Sbjct: 765 AGASSR-EIEQMQIRAQEIQTQINYLQE--------QQGELEATIQRLTAKLKQQEMELK 815

Query: 186 KYEYRATQLHLAAVRAQGHVEIQLNR 211
           +       L     R +  V+ Q  R
Sbjct: 816 RMHMDVASLTQQMPRLKEQVDWQAER 841


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 27.9 bits (59), Expect = 0.63
 Identities = 14/63 (22%), Positives = 32/63 (50%)

Query: 399 ENQMSTKHKKKQDSEPRIQGNETELEFFSKYVVQKLRKMETNQRIYSENLINTVLMLGQL 458
           ++Q+    +K  ++   I+ +E EL+   + +  K + M ++   Y E+      + GQ+
Sbjct: 399 QDQLIAAKQKSAEATTAIKQSEMELKHSQQLLRDKQKNMNSSDAAYLEDKRKLTKVEGQI 458

Query: 459 GKL 461
           G+L
Sbjct: 459 GQL 461


>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
            protein.
          Length = 1253

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)

Query: 263  NFFDDD---EVRYKFPTVLNRTKPAENKPKPKQKIKVNF 298
            N+ DDD   E++Y+ PTV        N+P   +K +V F
Sbjct: 1214 NYSDDDAREEMQYRRPTVELEMAERANRPPKNRKSRVAF 1252


>AJ439060-13|CAD27764.1|  319|Anopheles gambiae putative
           transcription factor protein.
          Length = 319

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 13/47 (27%), Positives = 22/47 (46%)

Query: 246 YFNNNLKSPNKHKKEKQNFFDDDEVRYKFPTVLNRTKPAENKPKPKQ 292
           +F N      K K+E+Q  F + E+  K   ++N    A+ K +  Q
Sbjct: 234 WFKNRRAKWRKQKREEQEQFSNYEINSKIRKLINIPVSAQEKLRQLQ 280


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 7/72 (9%)

Query: 389 KVSKRKSLNSENQMSTKHKKKQDSEPRIQGNETELEFFSKYVVQKLRKMETNQRIYSENL 448
           K  KRK L ++    ++   K++ +  IQG   EL+  +K +  K+    ++Q    ++L
Sbjct: 368 KEQKRKELYAKQGRGSQFSSKEERDKWIQG---ELKSLNKQIKDKI----SHQNKLQDDL 420

Query: 449 INTVLMLGQLGK 460
              +   G+L K
Sbjct: 421 KKDIAKQGELEK 432


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.313    0.128    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 419,257
Number of Sequences: 2123
Number of extensions: 14892
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 88
Number of HSP's gapped (non-prelim): 8
length of query: 470
length of database: 516,269
effective HSP length: 66
effective length of query: 404
effective length of database: 376,151
effective search space: 151965004
effective search space used: 151965004
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 50 (24.2 bits)