GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000404-TA|BGIBMGA000404-PA|undefined
         (470 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    24   3.1  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    24   3.1  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   5.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   5.5  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              23   7.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   9.6  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 237 NIRYKLNTQYFNNNLKSPNKHKKEKQNFFDDDEVRYKFP 275
           N  YK N  Y NNN  + N +KK   N  + +++    P
Sbjct: 91  NNNYKYN--YNNNNYNNNNYNKKLYYNIINIEQIPVPVP 127


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 237 NIRYKLNTQYFNNNLKSPNKHKKEKQNFFDDDEVRYKFP 275
           N  YK N  Y NNN  + N +KK   N  + +++    P
Sbjct: 91  NNNYKYN--YNNNNYNNNNYNKKLYYNIINIEQIPVPVP 127


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 1/96 (1%)

Query: 226 NKKNGYQSDDDNIRYKLNTQYFNNNLKSPNKHKKEKQNFFDDDEVRYKFPTVLNRTKPAE 285
           N+    Q+ D+    K N    N+N ++ NK    +QN    +  R       N  +   
Sbjct: 439 NQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQN-DNKQNGNRQNG 497

Query: 286 NKPKPKQKIKVNFWSNKQTSNRLHNVDPKSKTNRRH 321
           NK    ++       NK+  NR ++       N R+
Sbjct: 498 NKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNRN 533


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/41 (26%), Positives = 24/41 (58%)

Query: 116 VLREEMLLDRMAGGQARLSYEQLRKDAQDLETQIKLLQDGL 156
           ++R+E LL   + G A ++  ++ KD  + +  + +L DG+
Sbjct: 296 LIRQEGLLCGGSSGAALIAALKIAKDIPEEKRMVIILPDGI 336


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 37 AICQGGEI-ITEKCNTQLRRYESLCAQARAV 66
          A C  G + ++E+   +LR+ ES+CA+   +
Sbjct: 9  AFCLVGILAVSEESINKLRKIESVCAEENGI 39


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 14/56 (25%), Positives = 27/56 (48%)

Query: 212 SILLIVIDAVAKKMNKKNGYQSDDDNIRYKLNTQYFNNNLKSPNKHKKEKQNFFDD 267
           S L+ V   V KK+ K+N Y  D+ +     ++  + ++  S N  +K  +   +D
Sbjct: 929 SSLVDVSTPVNKKVYKQNDYIVDESSSSSFYSSFLYKSSESSCNPDQKPTEYLLED 984


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.128    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,882
Number of Sequences: 429
Number of extensions: 5103
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 6
length of query: 470
length of database: 140,377
effective HSP length: 60
effective length of query: 410
effective length of database: 114,637
effective search space: 47001170
effective search space used: 47001170
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 45 (22.2 bits)