BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA000403-TA|BGIBMGA000403-PA|IPR001873|Na+ channel, amiloride-sensitive (749 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_23646| Best HMM Match : ASC (HMM E-Value=1.4e-12) 36 0.12 SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12) 36 0.12 SB_19561| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.12 SB_15223| Best HMM Match : ASC (HMM E-Value=1.8e-19) 36 0.12 SB_42305| Best HMM Match : DM (HMM E-Value=0.47) 34 0.36 SB_46636| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.9 SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.6 SB_52562| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.4 SB_36224| Best HMM Match : ASC (HMM E-Value=1.9e-38) 31 4.5 SB_31018| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 4.5 SB_3195| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 4.5 SB_22423| Best HMM Match : ASC (HMM E-Value=1.8e-05) 30 7.8 >SB_23646| Best HMM Match : ASC (HMM E-Value=1.4e-12) Length = 885 Score = 35.9 bits (79), Expect = 0.12 Identities = 41/187 (21%), Positives = 69/187 (36%), Gaps = 14/187 (7%) Query: 462 DFFLSCKWNGRPIDCCKQFKPLATEYG-TCFSINNKNVAGTQIPLVATSNRRIPGELEIT 520 D C W K F + G TC++ N+ G + P+++ SN L + Sbjct: 233 DMIKECSWQKHGKCSWKNFTSFKSADGDTCYTFNS----GRKDPILSMSNVGEENGLRLV 288 Query: 521 TSQDYEAFIHSPEDVPFWNMEYDRRIRIV--YGSQATVTFT-IMDVVNEPEVSLIAPETR 577 + + + ++ F + +D+ V G + FT M++ +L P Sbjct: 289 IDTQHSEYYYDVKNAGFKVILHDQGETPVKMQGLSVSPGFTSYMELKRTKVTNLPFPYKT 348 Query: 578 QCRFSDETPENILAFKHYSYSVCITQCRIDAQLRMCNCTHHLSPIEFKDHVCDFE-GLKC 636 C PE + F YS S C + +C C P + K VCD+E C Sbjct: 349 MCGM----PE-LKYFNSYSKSKCFLDKLTQYVVTLCGCRDWFMPGQGKIPVCDYETAASC 403 Query: 637 LTNNYKT 643 + + T Sbjct: 404 MWKAWAT 410 >SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12) Length = 575 Score = 35.9 bits (79), Expect = 0.12 Identities = 45/185 (24%), Positives = 73/185 (39%), Gaps = 19/185 (10%) Query: 462 DFFLSCKWNGRPIDCCKQFKPLATE-----YGTCFSINN-KNVAGTQIPLVATSNRRIPG 515 D LSC + G P C + L + YG C+ N+ K+ G P++ SN+ P Sbjct: 121 DMVLSCTYRGIP--CTNYTENLWSRFWHYRYGNCYVFNSGKDWQGEPKPILR-SNKPGPA 177 Query: 516 E---LEITTSQ-DYEAFI-HSPEDVPFWNMEYDRRIRIVYGSQATVTFTIMDVVNEPEVS 570 LE+ Q +Y + H + + + + G + F+ + + Sbjct: 178 SGLTLELNAEQHEYVGQLSHEAGMRVLISTQGEMPSPLEKGISVSPGFSTTTGIRMTNIL 237 Query: 571 LIAP-ETRQCRFSDET-PENILAFKH---YSYSVCITQCRIDAQLRMCNCTHHLSPIEFK 625 P + C SD+ PEN+ ++ YS + C+ C QL MC C + P Sbjct: 238 RADPFNNKSCLSSDDIDPENLYKKRYNVSYSRTTCMDSCLAHKQLDMCGCLEYRFPNIDN 297 Query: 626 DHVCD 630 VCD Sbjct: 298 RTVCD 302 >SB_19561| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 410 Score = 35.9 bits (79), Expect = 0.12 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%) Query: 461 KDFFLSCKWNGRPIDCCKQFKPLAT-EYGTCFSINN 495 KDF C W G+P C F+ + T EYG CF+ N+ Sbjct: 247 KDFIFGCYWLGQP--CNTSFEQIFTPEYGNCFTFNS 280 >SB_15223| Best HMM Match : ASC (HMM E-Value=1.8e-19) Length = 605 Score = 35.9 bits (79), Expect = 0.12 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 13/98 (13%) Query: 577 RQCRFSDET-PENILAFKH---YSYSVCITQCRIDAQLRMCNCTHHLSPIEFKDHVC--- 629 + C SD+ PEN+ ++ YS + C+ C Q+ MC C + P VC Sbjct: 184 KSCLSSDDIDPENLYRKRYNVSYSRTTCMDSCLAHKQVDMCGCLEYRFPNIDNRTVCDIL 243 Query: 630 DFEGLKCLTNNYKTLGKLKVPGTNEAGLVCNCLPSCIE 667 D + ++CL N ++L + N+ G C P C E Sbjct: 244 DIDVIRCL-NKVQSLYQ-----DNKLGCSEKCRPPCNE 275 >SB_42305| Best HMM Match : DM (HMM E-Value=0.47) Length = 161 Score = 34.3 bits (75), Expect = 0.36 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 592 FKHYSYSVCITQCRIDAQLRMCNCTHHLSPIEFKDHVCDFE-GLKCLTNNYKT 643 FK Y+ S C+ +CR D ++MC C + F++ + E + C Y+T Sbjct: 6 FKKYTKSACLLKCRADYVMKMCKCRSYDLKEIFRNESINCECPVPCEITKYQT 58 >SB_46636| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 55 Score = 31.9 bits (69), Expect = 1.9 Identities = 16/36 (44%), Positives = 22/36 (61%) Query: 195 NSTRTSTPQRSSLEGTNSKSKKVSFFRRLGRSKDST 230 +S R S P+RSSL G +S++V+ R L S D T Sbjct: 6 SSVRRSCPERSSLYGATDRSRRVAVTRMLQGSLDYT 41 >SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1298 Score = 31.5 bits (68), Expect = 2.6 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 435 CLATCDFKPICSSDFTQTASMFRTPCKDFFLSCKWNGRPIDCCKQFKPLATEYGTCFSIN 494 CL+ C F C+ F P +DF + + P+ CK P +T Y C Sbjct: 882 CLS-CPFGASCAGYIKANDGFFGYPVQDFPPALNFTVCPVGYCKSPPPYSTMYNACSGSR 940 Query: 495 NKNVAGTQIPL 505 + +IPL Sbjct: 941 SAASELERIPL 951 >SB_52562| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1490 Score = 31.1 bits (67), Expect = 3.4 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 5/66 (7%) Query: 214 SKKVSFFRRLGRSKDSTPPRRTSSFT-----MQQPSVEMALRELTHPIHNEQLKNQQQVT 268 SKK S R L R +D PP+ TSS T Q +++ ELT E+ + Q + Sbjct: 1207 SKKRSTRRSLDRKQDKNPPQTTSSKTSTPAEKPQEQHKLSWAELTEEAEAEEARVHQAES 1266 Query: 269 FKLVKT 274 K KT Sbjct: 1267 LKQGKT 1272 >SB_36224| Best HMM Match : ASC (HMM E-Value=1.9e-38) Length = 451 Score = 30.7 bits (66), Expect = 4.5 Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 21/150 (14%) Query: 596 SYSVCITQCRIDAQLRMCNCTHHLSPIE----FKDHVCDFEGLKCLTNNYKT-LGKLKVP 650 S S C+ QC D ++ C C H L E F+ ++C ++C + L L P Sbjct: 282 SQSYCLVQCYSDMVVKRCGC-HMLGMTEETGRFQPNMCSCP-VRCSRVEFDVQLSSLYYP 339 Query: 651 GTNEAGLVCNCLPSCIEPDYNVISKKLSEPEKFLRARPSSFIMGSRPYQRVTRQV----- 705 N + N E + + + +++ R R I + Y+ +T +V Sbjct: 340 PDNFWETISN------ERSLTIYANDTKKFQEWYRRR---VIQLNVFYKELTTEVRKEKE 390 Query: 706 ARTTLDLVVAMGNCFGLCFGGSLLSIAEVV 735 A T DL G GL G S+L+IAE + Sbjct: 391 AYTISDLAGDFGGNMGLFLGCSILTIAEFI 420 >SB_31018| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1066 Score = 30.7 bits (66), Expect = 4.5 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Query: 444 ICSSDFTQTASMFRTPCKDFFLSCKWNGRPIDCCKQFKPLATEYGTCFS--INNKNVAGT 501 I +D Q+ ++ ++ C+WN PI PLATE S V T Sbjct: 323 IIENDIAQSVQRYQLAVQEAKHDCRWNDSPIAVSPLPTPLATEESDLPSDVTITAIVVAT 382 Query: 502 QIPLVATSN 510 P+++T+N Sbjct: 383 ANPIISTNN 391 >SB_3195| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 650 Score = 30.7 bits (66), Expect = 4.5 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Query: 487 YGTCFSINNKNVAGTQIPLVATSNRRIPGELEITTSQDYEAFIHSP 532 Y C I+N+ V Q+P + + PG+ +++T Q + HSP Sbjct: 259 YNLCRGIDNEPVRARQLPKSVSCGKNFPGKTKLSTCQ--QGASHSP 302 >SB_22423| Best HMM Match : ASC (HMM E-Value=1.8e-05) Length = 348 Score = 29.9 bits (64), Expect = 7.8 Identities = 11/21 (52%), Positives = 12/21 (57%) Query: 595 YSYSVCITQCRIDAQLRMCNC 615 YS S CI QC D + CNC Sbjct: 187 YSLSACIKQCLYDYGMEKCNC 207 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.323 0.136 0.423 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 24,491,254 Number of Sequences: 59808 Number of extensions: 1012754 Number of successful extensions: 2207 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 2200 Number of HSP's gapped (non-prelim): 14 length of query: 749 length of database: 16,821,457 effective HSP length: 88 effective length of query: 661 effective length of database: 11,558,353 effective search space: 7640071333 effective search space used: 7640071333 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (22.0 bits) S2: 64 (29.9 bits)
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