Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000403-TA|BGIBMGA000403-PA|IPR001873|Na+ channel,
amiloride-sensitive
         (749 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19920.1 68414.m02497 sulfate adenylyltransferase 2 / ATP-sul...    32   1.2  
At3g23320.1 68416.m02941 hypothetical protein                          30   6.5  
At3g19630.1 68416.m02488 radical SAM domain-containing protein s...    30   6.5  
At1g44080.1 68414.m05088 F-box protein-related / C-type lectin-r...    30   6.5  

>At1g19920.1 68414.m02497 sulfate adenylyltransferase 2 /
           ATP-sulfurylase 2 (ASA1) (MET3-1) (APS2) identical to
           ATP sulfurylase (APS2) [Arabidopsis thaliana] GI:1575324
          Length = 476

 Score = 32.3 bits (70), Expect = 1.2
 Identities = 17/50 (34%), Positives = 27/50 (54%)

Query: 527 AFIHSPEDVPFWNMEYDRRIRIVYGSQATVTFTIMDVVNEPEVSLIAPET 576
           +F+ S  + PF N+ Y R + +   S+ TV  +++D      V LI PET
Sbjct: 31  SFLSSSNNNPFLNLVYKRNLTMQSVSKMTVKSSLIDPDGGELVELIVPET 80


>At3g23320.1 68416.m02941 hypothetical protein 
          Length = 191

 Score = 29.9 bits (64), Expect = 6.5
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 313 ELLYRRFKHTCGNLTVHGPSFLARKDVHFVYKVIYFLIYVQIWIAAVATIRRYYNHYQEN 372
           +L YRR +    N+TV+    +  K+ +   ++ Y+L ++Q W  A  T++  + H ++N
Sbjct: 97  DLGYRRVEFEGDNITVN--RLIRNKETN--PRLRYYLEFIQQWSKAFTTVKFTFRHREQN 152


>At3g19630.1 68416.m02488 radical SAM domain-containing protein
           similar to florfenicol resistance protein
           [Staphylococcus sciuri] GI:9909980; contains Pfam
           profile PF04055: radical SAM domain protein
          Length = 372

 Score = 29.9 bits (64), Expect = 6.5
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 269 FKLVKTVLFSLFHLSSGTRQIILLKLEPKIFNKMTV 304
           FK + + L SLFH S GT   +L+KL+   F +  V
Sbjct: 59  FKTLTSSLHSLFHSSDGTTSKLLIKLQNGAFVEAVV 94


>At1g44080.1 68414.m05088 F-box protein-related / C-type
           lectin-related contains F-box domain Pfam:PF00646,
           PF00059: Lectin C-type domain
          Length = 347

 Score = 29.9 bits (64), Expect = 6.5
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 355 WIAAVATIRRYYNHYQENTIRFTTRTDYLEWNTTFASVTVCEIANVEKIWMISN 408
           W + VAT +R +NH++ N   F  +   +   +TF  VT+       K W+I N
Sbjct: 37  WRSTVATKKRLHNHFERNLPTFKKKKTVVS-PSTFFRVTLPSPCR-NKGWLIKN 88


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.136    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,000,021
Number of Sequences: 28952
Number of extensions: 704162
Number of successful extensions: 1585
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1583
Number of HSP's gapped (non-prelim): 4
length of query: 749
length of database: 12,070,560
effective HSP length: 87
effective length of query: 662
effective length of database: 9,551,736
effective search space: 6323249232
effective search space used: 6323249232
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 63 (29.5 bits)