GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000403-TA|BGIBMGA000403-PA|IPR001873|Na+ channel,
amiloride-sensitive
         (749 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    25   1.4  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   4.4  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    24   4.4  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 396 EIANVEKIWMISNEVSNDNFEKFDRFIGDIAF 427
           EI +  K+W  +N++S+DN  +F +   D  F
Sbjct: 412 EIRHKFKLWNFNNQISDDNPARFLQKAMDFPF 443


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 432 CYTCLATCDFKPICSSDFTQTASMFRTPCKDFFLSCKW 469
           C  C  TC  K + +S     ++++R  C+D   + K+
Sbjct: 261 CNKCDYTCVNKSMLNSHMKSHSNVYRYSCRDCSYATKY 298


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 432 CYTCLATCDFKPICSSDFTQTASMFRTPCKDFFLSCKW 469
           C  C  TC  K + +S     ++++R  C+D   + K+
Sbjct: 19  CNKCDYTCVNKSMLNSHMKSHSNVYRYSCRDCSYATKY 56


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.136    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,581
Number of Sequences: 317
Number of extensions: 7319
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 3
length of query: 749
length of database: 114,650
effective HSP length: 62
effective length of query: 687
effective length of database: 94,996
effective search space: 65262252
effective search space used: 65262252
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 47 (23.0 bits)