GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000403-TA|BGIBMGA000403-PA|IPR001873|Na+ channel,
amiloride-sensitive
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    29   2.4  
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    29   2.4  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    28   5.4  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    28   5.4  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    27   7.2  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   9.5  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   9.5  

>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/51 (25%), Positives = 20/51 (39%)

Query: 569  VSLIAPETRQCRFSDETPENILAFKHYSYSVCITQCRIDAQLRMCNCTHHL 619
            + +  P     R S++ P  +   KHY  S  +     D  LR    + HL
Sbjct: 969  IPIPVPPLDHMRLSEDVPAFLFLIKHYYVSAVLVNSEADTALRAKTTSQHL 1019


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 328 VH-GPSFLARKDVHFVYKVIYFLIYVQIWIAAVATIRRYYNHY 369
           VH GPS   R  +HF+    Y + Y+  +IA +  +  YYN Y
Sbjct: 192 VHSGPSMALRIFLHFLRSCFYLVQYIVAYIAML--LAMYYNGY 232


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 300  NKMTVWPKFKEHTELLYRRFKHTCGN 325
            NK T+ P  KE  E L R+F+  C N
Sbjct: 1429 NKSTLNPNLKETAEELERKFREFCSN 1454


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 208 EGTNSKSKKVSFFRRLGRSKDSTPPRRTSSFTMQQPSVEMALRELTH 254
           E T S S    ++ R GR  D  PP  T++F       + +LR+  H
Sbjct: 349 EVTGSSSYGSIYYNR-GRQPDQRPPNVTAAFNYTSDESQYSLRDSDH 394


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 304 VWPKFKEHTELLYRRFKHTCGNLTVHGPSFLARK 337
           ++PK K H E  Y++  H C  L +   SFL+ K
Sbjct: 267 MFPKLKGHYEETYQKALHRCRTLNLILISFLSTK 300


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 7/48 (14%)

Query: 327  TVHGPSFLARKDVHFVYKVIYFLI----YVQIWIAAV---ATIRRYYN 367
            +V+G S+      H V+K   FL+    YV IWIA V   A++ RY++
Sbjct: 2201 SVYGRSWAFMWSAHNVHKWAMFLLVILFYVAIWIALVALLASLSRYHS 2248


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 384 EWNTTFASVTVCEIANVEKIWMISNEVSNDNFEKFDRFIGDIAFFSGTCYTCLA 437
           E N  F+SVTV  +  V  IW+             DRF   + FF G+C   LA
Sbjct: 444 EINENFSSVTVSLL--VAPIWVFDAIAILTVLPLHDRFHKKMLFFVGSCLFVLA 495


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.136    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,343,566
Number of Sequences: 5004
Number of extensions: 140467
Number of successful extensions: 306
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 301
Number of HSP's gapped (non-prelim): 8
length of query: 749
length of database: 2,362,478
effective HSP length: 78
effective length of query: 671
effective length of database: 1,972,166
effective search space: 1323323386
effective search space used: 1323323386
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)