GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000403-TA|BGIBMGA000403-PA|IPR001873|Na+ channel,
amiloride-sensitive
         (749 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0562 + 4129852-4130235,4130355-4130453,4131046-4131146,413...    32   1.5  
06_03_1013 - 26896690-26896818,26897051-26897089,26897178-268973...    32   1.9  
02_01_0622 - 4658133-4658150,4658269-4658337,4658436-4658462,465...    32   1.9  
03_05_0062 + 20370608-20370977,20371062-20371541,20371661-203717...    31   4.4  
05_01_0337 - 2658647-2658722,2658797-2658915,2658995-2659102,265...    30   7.7  

>02_01_0562 +
           4129852-4130235,4130355-4130453,4131046-4131146,
           4131229-4131300,4131712-4131802,4132005-4132085,
           4132263-4132331,4132634-4132690,4132776-4132898,
           4133000-4133038,4133255-4133380
          Length = 413

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 1/110 (0%)

Query: 231 PPRRTSSFTMQQPSVEMALRELTHPIHNEQLKNQQQVTFKLVKTVLFSLFHLSSGTRQII 290
           PPRR S+      SV    ++    +   +  +++ V+  +++ +L     +S   + I 
Sbjct: 50  PPRRYSACYFFASSVCTPFKDWLPTVTRRERTDEEIVSSVVMRDLLAMPMPVSKNPK-IA 108

Query: 291 LLKLEPKIFNKMTVWPKFKEHTELLYRRFKHTCGNLTVHGPSFLARKDVH 340
           L+ L P       +W KF +  E  Y  + H      VH  S    +++H
Sbjct: 109 LMFLTPGSLPFEKLWEKFLQGHEDRYSIYIHASRERPVHSSSLFVGREIH 158


>06_03_1013 -
           26896690-26896818,26897051-26897089,26897178-26897300,
           26897822-26897902,26898048-26898138,26898325-26898396,
           26898474-26898574,26899211-26899309,26899942-26900286
          Length = 359

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 1/110 (0%)

Query: 231 PPRRTSSFTMQQPSVEMALRELTHPIHNEQLKNQQQVTFKLVKTVLFSLFHLSSGTRQII 290
           PPRR S   +         ++    +   +  +++ ++  +++ +L     +S   + I 
Sbjct: 37  PPRRYSQCYLFGSGACATFKDWLPSVTRRERTDEEIISSVVLRDILAMPMPVSKNPK-IA 95

Query: 291 LLKLEPKIFNKMTVWPKFKEHTELLYRRFKHTCGNLTVHGPSFLARKDVH 340
           L+ L P       +W KF +  E  Y  + H      VH  S    +D+H
Sbjct: 96  LMFLTPGTLPFEKLWEKFLQGQEGRYSIYVHASREKPVHTSSLFVGRDIH 145


>02_01_0622 -
           4658133-4658150,4658269-4658337,4658436-4658462,
           4658808-4658873,4658954-4659076,4659562-4659629,
           4659703-4659766,4659994-4660135,4660218-4660306,
           4660574-4660637,4660870-4661021,4661124-4661261,
           4661742-4661867,4661971-4662183,4662343-4662426,
           4662583-4662742,4662993-4663126,4664047-4664136,
           4664313-4664471,4665528-4665611,4666170-4666289,
           4666338-4666391,4666899-4666945,4667556-4667598,
           4667730-4668586,4668845-4668899
          Length = 1081

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 684 LRARPSSFIMGSR---PYQRVTRQVARTTLDLVVAMGNCFGLCFGGSLLSIAEVVYYLCF 740
           LRA P+  ++G R      +++ +V + T D ++       + FG  LL++ ++  +  F
Sbjct: 883 LRAEPNFSVLGKRLGKDMGKISNEVKKMTQDQILTFEESGEIFFGSHLLTLEDIKVFREF 942

Query: 741 KRWKYVKDK 749
           KR   V +K
Sbjct: 943 KRPANVSEK 951


>03_05_0062 +
           20370608-20370977,20371062-20371541,20371661-20371731,
           20371836-20371912,20372076-20372223,20372346-20372507,
           20372743-20372940
          Length = 501

 Score = 30.7 bits (66), Expect = 4.4
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 714 VAMGNCFGLCFGGSLLSIAEVVYYLCFK-RWK 744
           V  G   G+ F G LL++A +  +LC K RWK
Sbjct: 71  VPSGLLIGVAFAGFLLALASMFLFLCIKNRWK 102


>05_01_0337 -
           2658647-2658722,2658797-2658915,2658995-2659102,
           2659187-2659255,2659561-2659655,2659740-2659944,
           2660125-2660211,2660291-2660405,2660696-2660802,
           2661054-2661146,2661243-2661290,2661345-2661544,
           2661993-2662128,2662228-2662291,2662779-2662912
          Length = 551

 Score = 29.9 bits (64), Expect = 7.7
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 682 KFLRARPSSFIMGSRPYQRVTRQVARTTLDLVVAMGNCFGLCFGGSLL 729
           +FL    +S +MG  P + + + +ARTTL   V    CF L F  SLL
Sbjct: 131 EFLEKFKTSVVMGDEPDREILKMIARTTLRTKVG-AVCF-LAFKLSLL 176


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.136    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,448,301
Number of Sequences: 37544
Number of extensions: 826207
Number of successful extensions: 1818
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1818
Number of HSP's gapped (non-prelim): 5
length of query: 749
length of database: 14,793,348
effective HSP length: 88
effective length of query: 661
effective length of database: 11,489,476
effective search space: 7594543636
effective search space used: 7594543636
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 64 (29.9 bits)