GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000403-TA|BGIBMGA000403-PA|IPR001873|Na+ channel,
amiloride-sensitive
         (749 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    26   0.98 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    26   1.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   2.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   3.0  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          25   3.0  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   9.1  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 26.2 bits (55), Expect = 0.98
 Identities = 16/58 (27%), Positives = 22/58 (37%)

Query: 112 PDEFELPAPLPTPAFSRKNIFDRDFDALFEVASTPQFGANIRVTTPEPDHRPDVSASH 169
           PD  +LP P  T  F  K +    F    E A+    GA + +  P      D+   H
Sbjct: 137 PDTKDLPVPPLTEVFPDKYMDSGIFSRAREEANVVPEGARVPIEIPRDYTASDLDVEH 194


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 663 PSCIEPDYNVISKKLSEPEKFLRARPSSFIMGSRP 697
           P C+ P+Y    K+  E  +  + +P+S  M   P
Sbjct: 254 PECVVPEYQCAVKRKEEKAQKEKDKPNSTTMNGSP 288


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 216 KVSFFRRLGRSKDSTPPRRTSSFTMQQPSVEMALRELT 253
           KVS   R+G ++    P R +S   Q    EM+LRELT
Sbjct: 391 KVSGINRVGSTRR---PSRRNSCESQMMGDEMSLRELT 425


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 354 IWIAAVATIRRYYNHYQENTIRFTT 378
           ++ +   TI  YY+ Y+EN  ++TT
Sbjct: 416 VFFSIYKTILDYYHKYKENLPKYTT 440


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 354 IWIAAVATIRRYYNHYQENTIRFTT 378
           ++ +   TI  YY+ Y+EN  ++TT
Sbjct: 42  VFFSIYKTILDYYHKYKENLPKYTT 66


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 250 RELTHPIHNEQLKNQQQ 266
           RE  H +H EQL  +Q+
Sbjct: 103 RERKHAVHKEQLSREQR 119


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.136    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,364
Number of Sequences: 429
Number of extensions: 10050
Number of successful extensions: 27
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 7
length of query: 749
length of database: 140,377
effective HSP length: 63
effective length of query: 686
effective length of database: 113,350
effective search space: 77758100
effective search space used: 77758100
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 47 (23.0 bits)