GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000402-TA|BGIBMGA000402-PA|IPR000560|Histidine acid
phosphatase
         (756 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41552-8|AAC69099.2|  771|Caenorhabditis elegans Hypothetical pr...    36   0.14 
AL132865-2|CAB60593.1|  176|Caenorhabditis elegans Hypothetical ...    34   0.32 
Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical p...    33   0.75 
Z71259-8|CAA95788.2|  501|Caenorhabditis elegans Hypothetical pr...    31   2.3  
AF016439-5|AAB65900.1|  630|Caenorhabditis elegans Hypothetical ...    31   4.0  
U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical pr...    30   5.3  
AL117193-9|CAB60302.2|  737|Caenorhabditis elegans Hypothetical ...    30   6.9  

>U41552-8|AAC69099.2|  771|Caenorhabditis elegans Hypothetical
           protein K07E3.2 protein.
          Length = 771

 Score = 35.5 bits (78), Expect = 0.14
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 111 PAFGKWMQKSAEGFVNGLANGNLDIEKATTDFDIMDPYTTCGKYQRDVKKNPEIYLE--S 168
           P   +W+ K A  FV+G A    D+EK T  + + + + TC   +   K   +  +E   
Sbjct: 198 PECFEWLAKRAFQFVSGSAFHKSDVEKVTRKY-LTNCFATCMNLRMKNKSKTQFAIEYSQ 256

Query: 169 NKYLETTEFLATK 181
           N +LE T  +A K
Sbjct: 257 NMFLERTSQIANK 269


>AL132865-2|CAB60593.1|  176|Caenorhabditis elegans Hypothetical
           protein Y62E10A.3 protein.
          Length = 176

 Score = 34.3 bits (75), Expect = 0.32
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 474 TLLNSLESHYSFRSTPDKKTESSAKSFAEGLKIKNFDLETSKNNDEIVSPPHTCLRNKEE 533
           T+ N+ E+   FR TP K       +    L +K+F L  SK  +E  + PH  ++ KE+
Sbjct: 74  TITNTSENMVDFRITPIKNVCMDVSN-GSILAMKSFTLHLSKTGEEQSASPH-FIKMKEK 131

Query: 534 AEKNYNYVQVVK 545
               Y   ++VK
Sbjct: 132 NRNKYFTTRIVK 143


>Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical
           protein F45G2.2a protein.
          Length = 1235

 Score = 33.1 bits (72), Expect = 0.75
 Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 8/127 (6%)

Query: 434 IQNLRNWKLNNIIIENANDLTNEGQEEMIEFGKRL--QNAYPTLLNSLESHYSFRSTPDK 491
           ++ LR+  L+ +I++    L +   +  +E+ +RL  ++AYP +  ++ +    RS P  
Sbjct: 776 LEELRDEALSAVILKFQCSLRHYLAQ--LEYKRRLDREDAYPIIQENIRAWIKLRSWPWY 833

Query: 492 KTESSAKSFAEGLKIKNFDLETSKNNDEIVSPPHTCLRNKEEAEKNYNYVQVVKYRNSPE 551
           +  S  K   +G+K  N ++E  +   + +   H   + +EEA K Y      K     E
Sbjct: 834 RLFSRLKPMLKGMK-SNAEIEALEKKCKELEENH---KREEEARKKYADELRAKIDQYEE 889

Query: 552 YLAAKDR 558
             AA +R
Sbjct: 890 TKAAHER 896


>Z71259-8|CAA95788.2|  501|Caenorhabditis elegans Hypothetical
           protein F13G3.3 protein.
          Length = 501

 Score = 31.5 bits (68), Expect = 2.3
 Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 453 LTNEGQEEMIEFGKRLQNAYPTLLNSLESHYSFRSTPDKKTESSAKSFAEGLKIKNFDLE 512
           L N   E+  E GK +  A P+ +N+   H+  ++      +    S      I+  D  
Sbjct: 312 LRNIKHEQQTETGKMI--AIPSKINNTWIHWPQKNLKKLAVKPEFNSITHLKHIELLDGL 369

Query: 513 TSKNNDEIVSPPHTCLRNKEEAEKNYNYVQVVKYRNSPEYLAAKDRLQRRLGIDYPFT 570
            SKN +E    P T L N +    N N   + K  N   + ++  R  R L I+  ++
Sbjct: 370 KSKNEEEPKYNPSTGLDNDKPLISNKNIKMIEKDFNRMSWKSSVRRHLRNLPINMTYS 427


>AF016439-5|AAB65900.1|  630|Caenorhabditis elegans Hypothetical
           protein R02F11.4 protein.
          Length = 630

 Score = 30.7 bits (66), Expect = 4.0
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 590 IKISPWCALFTTDDLKVLEYIEDLRYYYGSGYGDSLNIKRGQIALTNLLDSFENAK 645
           IK+ P C +    D ++ ++I D  Y         L++ R Q+  TN L  FEN K
Sbjct: 95  IKLFPKCQIIDARDCQINKFIADFNYNL-----LELHLARNQLKETNQLGRFENLK 145


>U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical protein
            C18H2.5 protein.
          Length = 1139

 Score = 30.3 bits (65), Expect = 5.3
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)

Query: 527  CLRNKEEAEKNYNY-VQVVKYRN 548
            CL+NK+   K+YNY V+ VKY N
Sbjct: 987  CLKNKKNIAKDYNYLVENVKYNN 1009


>AL117193-9|CAB60302.2|  737|Caenorhabditis elegans Hypothetical
           protein Y105C5A.15 protein.
          Length = 737

 Score = 29.9 bits (64), Expect = 6.9
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 673 RDENPLTGSRRDPHRRWRSSILSAFSANLFAVLN 706
           RD   + GSR  P  +WRS+IL  F A     LN
Sbjct: 377 RDYRVIHGSRISPDWKWRSNILGVFKAKENESLN 410


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.135    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,575,457
Number of Sequences: 27539
Number of extensions: 874204
Number of successful extensions: 2075
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2067
Number of HSP's gapped (non-prelim): 14
length of query: 756
length of database: 12,573,161
effective HSP length: 87
effective length of query: 669
effective length of database: 10,177,268
effective search space: 6808592292
effective search space used: 6808592292
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)