Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000401-TA|BGIBMGA000401-PA|IPR001320|Ionotropic
glutamate receptor, IPR001508|NMDA receptor
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    32   0.35 
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    29   3.3  
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces...    28   4.4  
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    27   7.6  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    27   7.6  

>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 40  GRFVAHGHSDGARTIFRIVTALAPPFVMEGELDEDGQC 77
           GR    GHS G+  +F I++ L P FV E  +D+D  C
Sbjct: 392 GRIFIIGHSLGSTVVFDILS-LQPTFVKEITIDDDESC 428


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 10/122 (8%)

Query: 607  QGRSPRQLRSPKGRRKRCSLAGLNVRRFSTDS----VLGSDSVSN--IYERTCHNIGRRL 660
            Q R  + LRS  GR +  S +    RRFS  +      G  S  N  + ER   N   ++
Sbjct: 990  QERGSQFLRSSHGRSRERSTSARRSRRFSEANSEFDEFGPFSYKNLSVLERANRNAIEKI 1049

Query: 661  SRDVS-CLTNSPPDLNTRLRTPS--PMIRRTEASSTRSYQDVSLRSENYVSTDAPTSRAS 717
              +++  L  SPPD +      S  P  +  +   T S   ++ +  N+ STD+ T R S
Sbjct: 1050 RSEIAGKLHISPPDPHIGYTPGSDMPSAKLYDQQLTLSPSLMTNQGSNFSSTDS-TPRKS 1108

Query: 718  ID 719
            I+
Sbjct: 1109 IN 1110


>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 289

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 606 RQGRSPRQLRSPKGRRKRCSLAGLNV------RRFSTDSVLGSDSVSNIYE-RTCHNIGR 658
           R+  + R+LR  + R+K+  LA LN+      + F  DS+       +I+  R CH    
Sbjct: 83  REKPAERELREQEERQKKLRLAPLNLDPETAPKCFECDSIELDTKYFDIFHCRVCHTCRE 142

Query: 659 RLSRDVSCLTNSPPDLNTRLRTP 681
           +     S LT +   L+  L  P
Sbjct: 143 KYPDKYSLLTKTECKLDYLLTEP 165


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 5/39 (12%)

Query: 171 HEYTRPTDKYM---TLHDENYRSQYRNDYTILQQTSEIP 206
           +EYT  TD+YM     H+ +Y S++     +L  TS +P
Sbjct: 93  YEYTERTDRYMEQQNAHESSYNSRFIP--PVLHSTSSLP 129


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 657 GRRLSRDVSCLTNSPPDLNTRLRTPSPMIRRTEASSTRSYQDVSLRSENYVSTDAPTS 714
           GR   +D     +S    N R   PS   R+  +SS +S +  SL++EN V +  P S
Sbjct: 438 GREKEKDKDSGISSENVSNNREELPS--FRKRSSSSRQSEEIASLQAENAVFSSDPAS 493


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.135    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,248,436
Number of Sequences: 5004
Number of extensions: 129821
Number of successful extensions: 332
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 330
Number of HSP's gapped (non-prelim): 7
length of query: 787
length of database: 2,362,478
effective HSP length: 78
effective length of query: 709
effective length of database: 1,972,166
effective search space: 1398265694
effective search space used: 1398265694
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)