Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000401-TA|BGIBMGA000401-PA|IPR001320|Ionotropic
glutamate receptor, IPR001508|NMDA receptor
(787 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0618 - 4492057-4492590,4492780-4493192,4493714-4494026,449... 52 1e-06
06_01_0394 - 2835438-2835896,2836664-2836913,2837197-2837669,283... 46 9e-05
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928... 46 9e-05
07_03_0636 + 20168180-20168462,20168961-20170303,20170401-201706... 46 2e-04
04_04_0940 - 29539138-29539626,29540125-29540531,29540631-295406... 45 2e-04
07_01_0026 + 190568-190829,192475-194534,194620-195168 44 4e-04
06_03_1142 + 27961999-27962263,27963735-27965080,27965158-279654... 44 4e-04
06_01_0629 - 4582045-4582140,4582218-4582480,4582584-4582704,458... 44 4e-04
09_04_0204 - 15565684-15566223,15567272-15567678,15568143-155684... 41 0.004
06_01_0631 - 4605111-4605482,4605571-4605903,4605940-4605977,460... 41 0.004
09_04_0202 - 15544498-15545037,15546043-15546449,15546874-155469... 40 0.006
09_04_0199 - 15533619-15534107,15534956-15535362,15535559-155358... 40 0.006
06_01_0621 - 4511583-4512116,4512307-4512719,4513236-4513482 40 0.006
09_04_0203 - 15556064-15556561,15557537-15557581,15557852-155582... 40 0.008
06_01_0627 - 4567304-4567521,4567649-4567727,4567827-4568165,456... 39 0.013
06_01_0630 - 4598804-4599295,4599627-4599965,4600002-4600039,460... 39 0.018
09_04_0213 + 15706638-15707915 37 0.071
09_04_0214 + 15711576-15711891,15712615-15713903,15714410-157151... 34 0.50
06_01_0617 - 4483517-4483978,4484093-4484490,4484814-4484898,448... 33 1.2
02_01_0125 + 920128-920392,920491-921839,921921-922084,922340-92... 32 1.5
11_01_0559 - 4406815-4406922,4408954-4409042,4409177-4409270,440... 31 2.7
01_06_1838 + 40235648-40235776,40236292-40236372,40237148-402372... 31 3.5
11_06_0722 - 26678873-26680843 31 4.7
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 31 4.7
01_05_0081 - 17965802-17965849,17966257-17966328,17967581-17967793 30 6.2
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 30 8.2
>06_01_0618 -
4492057-4492590,4492780-4493192,4493714-4494026,
4495257-4495828,4498324-4498600
Length = 702
Score = 52.4 bits (120), Expect = 1e-06
Identities = 40/159 (25%), Positives = 79/159 (49%), Gaps = 11/159 (6%)
Query: 220 WNGVVGDLVSGAAHMSFAALSVSSARAEVIDFSQPYFFSGISVLAAPNQRPDIPL-LAFL 278
++ +V ++ SG + +++++ R +++F+ PY SG+S+L P + P+ F+
Sbjct: 273 YDDLVRNVSSGKFSAAVGDVTITADRENLVEFTMPYTSSGVSLL-VPEENDSKPIQWIFV 331
Query: 279 LPFSPELWIAIFTSLNVTAIAVAIYEWLSPFGLNPWGRQRSKNFSISSALWVMWGLLC-G 337
P + +LW+A T V W+ NP Q S +S+A + + L
Sbjct: 332 KPLTRDLWLATIGFFFYTGFVV----WMIEQPRNP-EYQGSSVRQLSTASYFAFSTLTFS 386
Query: 338 HLVAFKAPKSWPNKFLINVWGGFSVIFVASYTANIAALI 376
H K+P S K ++ +W +I V SYTA++++++
Sbjct: 387 HGQIIKSPLS---KIVVVIWCFVVLILVQSYTASLSSML 422
>06_01_0394 -
2835438-2835896,2836664-2836913,2837197-2837669,
2838941-2840608
Length = 949
Score = 46.4 bits (105), Expect = 9e-05
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 240 SVSSARAEVIDFSQPYFFSGISVLAAPNQRPDIPLLAFLLPFSPELWIAIFTSLNVTAIA 299
S+SS R + ++FSQPY SG+ ++ + FL PFSP +W+ I +A
Sbjct: 566 SISSGRYKFVEFSQPYTESGLVMVVPFSADTWDRSWIFLRPFSPAMWLLIAAVRLYNGVA 625
Query: 300 VAIYEWLSPFGLNPWGRQRSKNF-SISSALWVMWGLLCGHLVAFKAPKSWPNKFLINVWG 358
+ WL N G R + ++ LW+ L + +S +K + VW
Sbjct: 626 I----WLMERRHN--GDYRGGVWKQVTIVLWLSLAALLSPGEKERRLRSSLSKASMAVWL 679
Query: 359 GFSVIFVASYTANIAALI 376
+V+ +YTA++++L+
Sbjct: 680 LVAVVLATNYTASLSSLM 697
>02_05_1011 +
33487670-33487958,33490794-33492100,33492541-33492853,
33493190-33494247
Length = 988
Score = 46.4 bits (105), Expect = 9e-05
Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 11/156 (7%)
Query: 223 VVGDLVSGAAHMSFAALSVSSARAEVIDFSQPYFFSGISVLAAPNQRPDIPLLAFLLPFS 282
+V + S A ++++++R E +DF+ P+ SG S++ A + + FL P +
Sbjct: 525 LVDQVSSQKADAVVGDVTITASRMEEVDFTMPFTESGWSMVVAVQKETSTSMWIFLQPLT 584
Query: 283 PELWIAIFTSLNVTAIAVAIYEWL--SPFGLNPWGRQRSKNFSISSALWVMWGLLCGHLV 340
LW+A T V + E F PW +Q F S + L+ H
Sbjct: 585 TSLWLASLAFFCFTGFVVWVIEHRINEEFRGTPW-QQFGLIFYFSFST-----LVFSHKE 638
Query: 341 AFKAPKSWPNKFLINVWGGFSVIFVASYTANIAALI 376
++ S +F++ +W +I +SYTA++ +++
Sbjct: 639 KLESNLS---RFVVIIWVFVVLILTSSYTASLTSML 671
>07_03_0636 +
20168180-20168462,20168961-20170303,20170401-20170678,
20170790-20170821,20170908-20171314,20171401-20171847
Length = 929
Score = 45.6 bits (103), Expect = 2e-04
Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 14/180 (7%)
Query: 239 LSVSSARAEVIDFSQPYFFSGISVLAAPNQRPDIPLLAFLLPFSPELWIAIFTSLNVTAI 298
+++ + R ++DF+QPY SG+ +L AP + + AFL PF+ ++W + L V +
Sbjct: 551 IAIVTNRTRLVDFTQPYTESGLIIL-APAREIESNAWAFLKPFTFQMW----SVLGVLFL 605
Query: 299 AVAIYEWLSPFGLNPWGRQRSKNFSISSALWVMWGLLCGHLVAFKAPKSWPNKFLINVWG 358
V W+ N R + I + W + + + S +F++ VW
Sbjct: 606 FVGAVVWVLEHRTNTEFRGPPRQ-QIMTVCWFSFSTM--FFAHRENTVSALGRFVLLVWL 662
Query: 359 GFSVIFVASYTANIAALIAGLFFHNAVDDFQGGDNWLS--LKVGTARSSVA-EYYVQRNN 415
+I +SYTA++ +L L QG D+ +S +G S A Y VQ N
Sbjct: 663 FVVLIINSSYTASLTSL---LTVQELTSGIQGLDSLISSPSSIGYQVGSFARSYLVQELN 719
>04_04_0940 -
29539138-29539626,29540125-29540531,29540631-29540662,
29540809-29541086,29541164-29542515,29542616-29542874
Length = 938
Score = 45.2 bits (102), Expect = 2e-04
Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 8/138 (5%)
Query: 239 LSVSSARAEVIDFSQPYFFSGISVLAAPNQRPDIPLLAFLLPFSPELWIAIFTSLNVTAI 298
+++ + R +V+DF+QPY SG+ VL + +R + AFL PF+ ++W T L I
Sbjct: 546 VTIITNRTKVVDFTQPYVSSGLVVLTSV-KRQNSGGWAFLQPFTIKMWTV--TGLFFLII 602
Query: 299 AVAIYEWLSPFGLNPWGRQRSKNFSISSALWVMWGLLCGHLVAFKAPKSWPNKFLINVWG 358
+ W+ +N R + + W + L + +S +F+I +W
Sbjct: 603 GTVV--WMLEHRINDEFRGPPAK-QLITVFWFSFSTL--FFAHREDTRSTLGRFVIIIWL 657
Query: 359 GFSVIFVASYTANIAALI 376
+I +SYTA++ +++
Sbjct: 658 FVVLIIQSSYTASLTSIL 675
>07_01_0026 + 190568-190829,192475-194534,194620-195168
Length = 956
Score = 44.4 bits (100), Expect = 4e-04
Identities = 49/215 (22%), Positives = 90/215 (41%), Gaps = 13/215 (6%)
Query: 223 VVGDLVSGAAHMSFAALSVSSARAEVIDFSQPYFFSGISVLAAPNQRPDIPLLAFLLPFS 282
+V + G + +S+ + R V+DF+QPY SG+ ++ A +R AFL PF+
Sbjct: 533 LVQRVAEGELDAAVGDISIVTNRTRVVDFTQPYVESGLVIVTAVRERAS-SAWAFLKPFT 591
Query: 283 PELWIAIFTSLNVTAIAVAIYEWLSPFGLNPWGRQRSKNFSISSALWVMWGLLCGHLVAF 342
E+W A+ + AV W+ N R S + + W + +
Sbjct: 592 REMW-AVTGGFFLFVGAVV---WVLEHRSNTDFR-GSPRKQLVTVFWFSFSTM--FFAHR 644
Query: 343 KAPKSWPNKFLINVWGGFSVIFVASYTANIAALIAGLFFHNAVDDFQGGDNWL--SLKVG 400
+ S + ++ +W +I +SYTA++ ++ L QG D + S +G
Sbjct: 645 ENTVSTLGRLVLIIWLFVVLIINSSYTASLTSI---LTVQQLSTGIQGLDGLIASSDPIG 701
Query: 401 TARSSVAEYYVQRNNPHLAQQMRRYALQDIEEGIQ 435
S A+ Y+ + ++R A+ D +Q
Sbjct: 702 FQVGSFAKSYLMQELGVPESRLRELAITDYASSLQ 736
>06_03_1142 +
27961999-27962263,27963735-27965080,27965158-27965435,
27965706-27965737,27965830-27966236,27966373-27966858
Length = 937
Score = 44.4 bits (100), Expect = 4e-04
Identities = 37/170 (21%), Positives = 76/170 (44%), Gaps = 11/170 (6%)
Query: 207 LISDDLEDEDVMKWNGVVGDLVSGAAHMSFAALSVSSARAEVIDFSQPYFFSGISVLAAP 266
+I D L++ + ++ ++ + + + + ++ R ++ +FSQPY SG+ V+ P
Sbjct: 517 VIGDGLKNPN---YDDIINMVAANSLDAAVGDFAIVRNRTKIAEFSQPYIESGL-VIVVP 572
Query: 267 NQRPDIPLLAFLLPFSPELWIAIFTSLNVTAIAVAIYEWLSPFGLNPWGRQRSKNFSISS 326
+ AFL PF+ E+W V I V I W+ N R + I +
Sbjct: 573 VKEASSSAWAFLKPFTLEMWCV----TGVLFIFVGIVVWILEHRTNEEFRGSPRRQMI-T 627
Query: 327 ALWVMWGLLCGHLVAFKAPKSWPNKFLINVWGGFSVIFVASYTANIAALI 376
W + + + S +F++ +W +I +SYTA++ +++
Sbjct: 628 IFWFSFSTM--FFAHRQNTVSALGRFVLIIWLFVVLIINSSYTASLTSIL 675
>06_01_0629 -
4582045-4582140,4582218-4582480,4582584-4582704,
4582833-4583171,4583208-4583245,4583355-4583670,
4583753-4584006,4586417-4586546
Length = 518
Score = 44.4 bits (100), Expect = 4e-04
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 10/146 (6%)
Query: 220 WNGVVGDLVSGAAHMSFAALSVSSARAEVIDFSQPYFFSGISVLA-APNQRPDIPLLAFL 278
++ +V + SG + +++ + RA ++F+ PY SG+S+L A N+ FL
Sbjct: 118 YDELVQSVSSGINDAAVGDITIIADRASHVEFTMPYTESGVSMLVLAKNESESKIEWVFL 177
Query: 279 LPFSPELWIAIFTSLNVTAIAVAIYEWLSPFGLNPWGRQRSKNFSISSALWVMWGLLC-G 337
P + ELW A TA+ + I E P + Q S +S+AL+ + L
Sbjct: 178 KPLTKELWFATVIFFLFTALVIWIIE--HPRNME---YQGSNTRQLSTALYFAFSTLTFS 232
Query: 338 HLVAFKAPKSWPNKFLINVWGGFSVI 363
H K+P S K +++ FS I
Sbjct: 233 HGQIIKSPLS---KIVVSYTASFSSI 255
>09_04_0204 -
15565684-15566223,15567272-15567678,15568143-15568446,
15568735-15570065,15570769-15570846,15570943-15571027
Length = 914
Score = 40.7 bits (91), Expect = 0.004
Identities = 31/157 (19%), Positives = 66/157 (42%), Gaps = 10/157 (6%)
Query: 220 WNGVVGDLVSGAAHMSFAALSVSSARAEVIDFSQPYFFSGISVLAAPNQRPDIPLLAFLL 279
+N V + G + +++ R +DF+ PY SG++++ D FL
Sbjct: 488 YNDFVYQVHLGVYDTAIGDITIRYNRTSYVDFTLPYTESGVAMIVPVKDDRDKNTWVFLK 547
Query: 280 PFSPELWIAIFTSLNVTAIAVAIYEWLSPFGLNPWGRQRSKNFSISSALWVMWGLLCGHL 339
P + +LW TAI + WL +N + + +F + + +
Sbjct: 548 PLTTDLWFGSIAFFIYTAIVI----WLLERRIN--NAELTGSFFRQLGIAIYFSFFADR- 600
Query: 340 VAFKAPKSWPNKFLINVWGGFSVIFVASYTANIAALI 376
+ S ++ ++ VW ++ +SYTAN+++++
Sbjct: 601 ---ERVDSILSRLVVIVWVFVLLVITSSYTANLSSML 634
>06_01_0631 -
4605111-4605482,4605571-4605903,4605940-4605977,
4606208-4606520,4606622-4607967,4608265-4608334,
4608478-4608555
Length = 849
Score = 40.7 bits (91), Expect = 0.004
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 239 LSVSSARAEVIDFSQPYFFSGISVLAAPNQRPDIPLLAFLLPFSPELWIAIFTSLNVTAI 298
+++ + R +DF+ PY SG+S+L + FL P + +LWIA + T +
Sbjct: 507 VTIIANRTRYVDFTMPYTESGVSMLVLSKSDDEPTTWIFLQPLAKDLWIATMIFIFFTGL 566
Query: 299 AVAIYE 304
V + E
Sbjct: 567 VVWVIE 572
>09_04_0202 -
15544498-15545037,15546043-15546449,15546874-15546977,
15547580-15547788,15548092-15549428,15551680-15551941
Length = 952
Score = 40.3 bits (90), Expect = 0.006
Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 7/138 (5%)
Query: 239 LSVSSARAEVIDFSQPYFFSGISVLAAPNQRPDIPLLAFLLPFSPELWIAIFTSLNVTAI 298
+++ +R +DF+ PY SG++++ P++ FL P S +LW+A + T
Sbjct: 542 ITIRHSRMAYVDFTVPYTESGVAMI-VPSKGTVDKTWIFLQPLSRDLWVATISMFFYTGC 600
Query: 299 AVAIYEWLSPFGLNPWGRQRSKNFSISSALWVMWGLLCGHLVAFKAPKSWPNKFLINVWG 358
V I L+ L W + + + L + L + + ++ ++ VW
Sbjct: 601 VVWIE--LNVVKLTGW-KGKMNYMQVGVRLETSF---ANQLKENERVERILSRIVLIVWV 654
Query: 359 GFSVIFVASYTANIAALI 376
F +I + YTAN+A ++
Sbjct: 655 FFFLILSSGYTANLATML 672
>09_04_0199 -
15533619-15534107,15534956-15535362,15535559-15535862,
15537061-15538397,15539463-15539727
Length = 933
Score = 40.3 bits (90), Expect = 0.006
Identities = 32/159 (20%), Positives = 66/159 (41%), Gaps = 14/159 (8%)
Query: 220 WNGVVGDLVSGAAHMSFAALSVSSARAEVIDFSQPYFFSGISVLAAPNQRPDIPLLAFLL 279
+N V + G + +++ R +DF+ PY SG++++ + FL
Sbjct: 524 YNDFVYQVYLGVYDAAIGDITIRYNRTSYVDFTLPYTESGVAMIVPVRDDRNKNTWVFLK 583
Query: 280 PFSPELWIAIFTSLNVTAIAVAIYEWLSPFGLNPWGRQRSKNFSISSALWVMWGLLC--G 337
P + +LW TAI + WL +RS N ++ + G+
Sbjct: 584 PLTTDLWFGSIAFFVYTAIVI----WLL--------ERRSNNAELTGSFLRQLGIAIYFS 631
Query: 338 HLVAFKAPKSWPNKFLINVWGGFSVIFVASYTANIAALI 376
+ S ++ ++ VW ++ +SYTAN+++++
Sbjct: 632 FFADRERVDSILSRLVVIVWVFVLLVITSSYTANLSSML 670
>06_01_0621 - 4511583-4512116,4512307-4512719,4513236-4513482
Length = 397
Score = 40.3 bits (90), Expect = 0.006
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 11/125 (8%)
Query: 254 PYFFSGISVLAAPNQRPDIPLL-AFLLPFSPELWIAIFTSLNVTAIAVAIYEWLSPFGLN 312
PY SG+S+L P + P+ F+ P + +LW+A T V W+ N
Sbjct: 2 PYTSSGVSLLV-PEENDSKPIQWIFVKPLTRDLWLATIGFFFYTGFVV----WMIEQPRN 56
Query: 313 PWGRQRSKNFSISSALWVMWGLLC-GHLVAFKAPKSWPNKFLINVWGGFSVIFVASYTAN 371
P Q S +S+A + + L H K+P S K ++ +W +I V SYTA+
Sbjct: 57 P-EYQGSSVRQLSTASYFAFSTLTFSHGQIIKSPLS---KIVVVIWCFVVLILVQSYTAS 112
Query: 372 IAALI 376
+++++
Sbjct: 113 LSSML 117
>09_04_0203 -
15556064-15556561,15557537-15557581,15557852-15558258,
15558538-15558841,15559421-15560757,15561492-15561750
Length = 949
Score = 39.9 bits (89), Expect = 0.008
Identities = 32/167 (19%), Positives = 69/167 (41%), Gaps = 10/167 (5%)
Query: 210 DDLEDEDVMKWNGVVGDLVSGAAHMSFAALSVSSARAEVIDFSQPYFFSGISVLAAPNQR 269
DD + + +N V + G + +++ R +DF+ PY SG++++
Sbjct: 512 DDGQGVNSGSYNDFVYQVHLGVYDAAIGDITIRYNRTSYVDFTLPYTESGVAMIVPVKDD 571
Query: 270 PDIPLLAFLLPFSPELWIAIFTSLNVTAIAVAIYEWLSPFGLNPWGRQRSKNFSISSALW 329
D FL P + LW TA+ + WL +N + + +F +
Sbjct: 572 RDKNTWVFLKPLTTGLWFGSIAFFIYTAVVI----WLLERRIN--NAELTGSFFRQLGIA 625
Query: 330 VMWGLLCGHLVAFKAPKSWPNKFLINVWGGFSVIFVASYTANIAALI 376
+ + + S ++ ++ VW ++ +SYTAN+++++
Sbjct: 626 IYFSFFADR----ERVDSILSRLVVIVWVFVLLVITSSYTANLSSML 668
>06_01_0627 -
4567304-4567521,4567649-4567727,4567827-4568165,
4568202-4568239,4568462-4568837
Length = 349
Score = 39.1 bits (87), Expect = 0.013
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 239 LSVSSARAEVIDFSQPYFFSGISVLA-APNQRPDIPLLAFLLPFSPELWIA 288
+++++ RA ++F+ PY SG+S+L A N+ FL P + ELW A
Sbjct: 65 ITITADRASQVEFTMPYTESGVSMLVLAKNESESTTKWVFLKPLTKELWFA 115
>06_01_0630 -
4598804-4599295,4599627-4599965,4600002-4600039,
4600145-4600460,4600541-4600794,4601586-4601651,
4603422-4603617
Length = 566
Score = 38.7 bits (86), Expect = 0.018
Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 18/155 (11%)
Query: 220 WNGVVGDLV----SGAAHMSFAALSVSSARAEVIDFSQPYFFSGISVLA-APNQRPDIPL 274
+NG +LV SG + +++++ R DF+ PY SG+S+L N
Sbjct: 158 FNGSYDELVQRVSSGNYDAAVGDVTITAERTIHADFTMPYTESGVSMLVLMENDSKSTIE 217
Query: 275 LAFLLPFSPELWIAIFTSLNVTAIAVAIYEWLSPFGLNPWGRQRSKNFSISSALWVMWGL 334
FL P + ELW+A T I + + E P L Q S + S+AL+ +
Sbjct: 218 WVFLKPLTRELWVATVIFFLFTGIVIWMIE--RPRNLE---YQGSSSRQFSTALYFSFST 272
Query: 335 LC---GHLVAFKAPKSWPNKFLINVWGGFSVIFVA 366
L GH++ K+P S K +++ S I A
Sbjct: 273 LTFSHGHII--KSPLS---KIVVSYTASLSSILTA 302
>09_04_0213 + 15706638-15707915
Length = 425
Score = 36.7 bits (81), Expect = 0.071
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 239 LSVSSARAEVIDFSQPYFFSGISVLAAPNQ--RPDIPLLAFLLPFSPELWIAIFTSLNVT 296
+++++AR+ +DF+ P+ SGI+++A R FL P +LW+A L +T
Sbjct: 1 MTITAARSSYVDFTLPFMASGIAMVAPLRDVGRGGERTWVFLKPLRYDLWLASAAFLLLT 60
Query: 297 AIAVAIYE 304
AV E
Sbjct: 61 GFAVWFVE 68
>09_04_0214 +
15711576-15711891,15712615-15713903,15714410-15715117,
15715369-15715908
Length = 950
Score = 33.9 bits (74), Expect = 0.50
Identities = 36/161 (22%), Positives = 65/161 (40%), Gaps = 13/161 (8%)
Query: 221 NGVVGDLVSGAAHMSFAA----LSVSSARAEVIDFSQPYFFSGISVLAAPNQRPDIPLLA 276
NG +L+ F A +++ + R+ +DF+ PY SG+ +L +
Sbjct: 522 NGTYDELIYKVYQNDFDAAVGDITILANRSLYVDFTLPYTESGVRMLVPVQDQRQKTAWT 581
Query: 277 FLLPFSPELWIAIFTSLNVTAIAVAIYEWLSPFGLNPWGRQRSKNFSISSALWVMWG-LL 335
FL P + +LW+ +T V W N R N I S + + L+
Sbjct: 582 FLQPLTADLWLGTAAFFVLTGFVV----WFIEHRTNEDFRGPPVN-QIGSVFYFAFSTLV 636
Query: 336 CGHLVAFKAPKSWPNKFLINVWGGFSVIFVASYTANIAALI 376
H S + L+ +W +I SYTA++++++
Sbjct: 637 FAHRQKIVNNLS---RVLLVIWLFVVLILQRSYTASLSSIL 674
>06_01_0617 -
4483517-4483978,4484093-4484490,4484814-4484898,
4485002-4485838
Length = 593
Score = 32.7 bits (71), Expect = 1.2
Identities = 17/78 (21%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 220 WNGVVGDLVSGAAHMSFAALSVSSARAEVIDFSQPYFFSGISVLAAPNQRPDIPLLAFLL 279
++ +VG + SG + + +S+++ R +DF+ PY SG ++ +P + + + F +
Sbjct: 269 YDDLVGSVSSGKFNATVGDVSITAERERHVDFTMPYTQSG-QIIRSPMSKIVVVIWCFAV 327
Query: 280 PFSPELWIAIFTSLNVTA 297
+ + A +S+ T+
Sbjct: 328 VILVQSYTASLSSMLTTS 345
>02_01_0125 +
920128-920392,920491-921839,921921-922084,922340-922370,
922534-922565,922730-923060,923210-923713
Length = 891
Score = 32.3 bits (70), Expect = 1.5
Identities = 15/47 (31%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 239 LSVSSARAEVIDFSQPYFFSGISVLAAPNQRPDIPLLAFLLPFSPEL 285
++++ +R DF+QP+ SG+ V+ AP ++ + AFL PF+ ++
Sbjct: 547 IAITMSRTVTTDFTQPFIESGL-VILAPVKKHIVNSWAFLQPFTLQM 592
>11_01_0559 -
4406815-4406922,4408954-4409042,4409177-4409270,
4409344-4409481,4409570-4409727,4409826-4409916,
4410003-4411637
Length = 770
Score = 31.5 bits (68), Expect = 2.7
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 38 PGGRFVAHGHSDGARTIFRIVTALAPPFVMEGELDEDGQCLRGLLCH 84
P GRF+A G D ++ +V APP M EL Q L L H
Sbjct: 436 PDGRFLASGGEDRVVHVWHVVDDGAPPSSMSPELLSSSQSLPPLAPH 482
>01_06_1838 +
40235648-40235776,40236292-40236372,40237148-40237267,
40237399-40237527
Length = 152
Score = 31.1 bits (67), Expect = 3.5
Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 5/116 (4%)
Query: 129 CYGLAMDLLENIAQELEFDFHLYIVEDGAYGSRQLVKTFRSFHEYTRPTDKYMTLHDENY 188
C+ A+D +A EL + H + + + T + +H + K +D +
Sbjct: 36 CFQKAVD----VAPELHMEIHRQMASQASQAASSTSNTRKIWHNFHMVDFKIYVDNDPTF 91
Query: 189 RSQYRNDYTILQQTSEIPLISDDLEDEDVMKWNGVVGDLVSGAAHMSFAALSVSSA 244
+N Y + SEI L + +D W V G +V G + + L+ S+A
Sbjct: 92 SIPAKNPYPSQARDSEI-LWQSRKKKKDSDFWYDVFGWVVLGVGMVVWVGLAKSNA 146
>11_06_0722 - 26678873-26680843
Length = 656
Score = 30.7 bits (66), Expect = 4.7
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 270 PDIPLLAFLLPFSPELWIAIFTSLNVTAIAVAIYEWLSP--FGLNPWGRQRSKNFSISSA 327
PD L FL+ + + A+FTS+ TAIA+A+ E L + + W + + +++
Sbjct: 307 PDEDELKFLVNANHRNYDALFTSV--TAIAIALLEGLQVYIYLASAWSKVAMISKYVTTD 364
Query: 328 LW---VMWGLLCGHLVAFKAPKSWPNK 351
W V++ L G + + + +SW +K
Sbjct: 365 SWNSSVLFSKLIGCITSLRYFRSWEDK 391
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 30.7 bits (66), Expect = 4.7
Identities = 35/104 (33%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Query: 603 RSPRQGR-SPRQLRSPKGRRKRC-SLAGLNVRRFSTDSVLGSDSVSNIYERT-------C 653
RSP + R SP + RSP RR+R + + RR S S + R
Sbjct: 227 RSPARDRGSPPRRRSPPARRERSPAPRSRSPRRRSPVKTTSSHRERSPVRRNGSPRRSPV 286
Query: 654 HNIGRRLSRD-VSCLTNSPPDLNTRLRTPSPMIRRTEAS-STRS 695
+IGR RD V SP +R R+PSP +R S S RS
Sbjct: 287 RSIGRSPQRDRVKEQVRSPKQAQSRSRSPSPARKRESRSPSPRS 330
>01_05_0081 - 17965802-17965849,17966257-17966328,17967581-17967793
Length = 110
Score = 30.3 bits (65), Expect = 6.2
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 292 SLNVTAIAVAIYE-WLSPFGLNPWGRQRSKNFSISSALWVMWGLLCGHLVAF 342
S+ + A+ A+ E W+ P L W K +I W W +C H+ +
Sbjct: 48 SVPLVAMQAALQEDWICPSVLRAWMIANLKQMTIQIIFWNPWLYVCKHIALY 99
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 29.9 bits (64), Expect = 8.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 595 SPSPDTSHRSPRQGRSPRQLRSPKG 619
S SP R+ R+ RSPR RSP+G
Sbjct: 167 SQSPRRDSRNERRSRSPRDSRSPRG 191
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.135 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,050,280
Number of Sequences: 37544
Number of extensions: 846169
Number of successful extensions: 2072
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2036
Number of HSP's gapped (non-prelim): 42
length of query: 787
length of database: 14,793,348
effective HSP length: 88
effective length of query: 699
effective length of database: 11,489,476
effective search space: 8031143724
effective search space used: 8031143724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)
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