GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000401-TA|BGIBMGA000401-PA|IPR001320|Ionotropic
glutamate receptor, IPR001508|NMDA receptor
         (787 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    23   6.1  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    23   8.1  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    23   8.1  

>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 332 WGLLCGHLVAFKAPKSWPNKFLINVWGGFSVIFVASY 368
           +GLL G+ + ++    + N  ++ V+G F ++FV  Y
Sbjct: 110 FGLL-GYSINYRRISIFVNLAILGVFGEFVLVFVPDY 145


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 255 YFFSGISVLAAPNQRPDI--PLLAFLLPFSPELWIAIFTSLNVTAIAVAIYEWLSPFGLN 312
           YFF+  +++A  +++  I   L+   L    +LW  ++TS  VT    +    ++P  L 
Sbjct: 248 YFFTTGNIIATYDKQFYIHNALIVRALFLFFQLWATVYTSSQVTREVQSRSNRMTPLKLQ 307

Query: 313 P 313
           P
Sbjct: 308 P 308


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 255 YFFSGISVLAAPNQRPDI--PLLAFLLPFSPELWIAIFTSLNVTAIAVAIYEWLSPFGLN 312
           YFF+  +++A  +++  I   L+   L    +LW  ++TS  VT    +    ++P  L 
Sbjct: 244 YFFTTGNIIATYDKQFYIHNALIVRALFLFFQLWATVYTSSQVTREVQSRSNRMTPLKLQ 303

Query: 313 P 313
           P
Sbjct: 304 P 304


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.135    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,822
Number of Sequences: 317
Number of extensions: 6734
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 3
length of query: 787
length of database: 114,650
effective HSP length: 62
effective length of query: 725
effective length of database: 94,996
effective search space: 68872100
effective search space used: 68872100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)