GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000401-TA|BGIBMGA000401-PA|IPR001320|Ionotropic
glutamate receptor, IPR001508|NMDA receptor
         (787 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...   122   1e-29
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   7.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   7.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   9.6  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   9.6  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score =  122 bits (294), Expect = 1e-29
 Identities = 73/236 (30%), Positives = 124/236 (52%), Gaps = 10/236 (4%)

Query: 219 KWNGVVGDLVSGAAHMSFAALSVSSARAEVIDFSQPYFFSGISVLAAPNQRPDIPLLAFL 278
           +W G++G+LV+  A M  A L+++  RAE I+FS+P+ + GI++L     R    L++FL
Sbjct: 503 EWTGLIGELVNERADMIVAPLTINPERAEFIEFSKPFKYQGITILEKKPSRSST-LVSFL 561

Query: 279 LPFSPELWIAIFTSLNVTAIAVAIYEWLSPFG----LNPWGRQRSKNFSISSALWVMWGL 334
            PFS  LWI +  S++V A+ + + +  SPFG     N  G +     ++SSA+W  WG+
Sbjct: 562 QPFSNTLWILVMVSVHVVALVLYLLDRFSPFGRFKLANTDGTEEDA-LNLSSAVWFAWGV 620

Query: 335 LCGHLVAFKAPKSWPNKFLINVWGGFSVIFVASYTANIAALIA---GLFFHNAVDDFQGG 391
           L    +    P+S+  + L  VW GF++I VASYTAN+AA +           ++D +  
Sbjct: 621 LLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTKLTGINDARLR 680

Query: 392 DNWLSLKVGTARSSVAEYYVQRNNPHLAQQMRRYALQDIEEGIQRLRSDSISSVIA 447
           +   +L   T + S  + Y +R    L+   R     + +   + +R   I  ++A
Sbjct: 681 NTMENLTCATVKGSAVDMYFRR-QVELSNMYRTMEANNYDTAEEAIRDIKIGKLMA 735



 Score = 35.9 bits (79), Expect = 0.001
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 126 THCCYGLAMDLLENIAQELEFDFHLYIVEDGAYGS 160
           T CC G  MDLL+ +++ + F + L +  DG +G+
Sbjct: 456 TFCCKGYCMDLLKELSKTINFTYSLALSPDGQFGN 490


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 9   LVQGTDGNNIWRQVGQVEG 27
           +VQ  D NN W  +  VEG
Sbjct: 189 IVQSFDYNNTWVYIADVEG 207


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 650  ERTCHNIGRRLSRDVSCLTNSP 671
            ER  HN G++  RD   LT++P
Sbjct: 1426 EREVHNGGQQEDRDRKTLTSAP 1447


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 338 HLVAFKAPKSWPNKFLINVWGGFSVIFVASYTANIAALI 376
           +L   + PK  P   ++ +   + VIFV  +  NI   I
Sbjct: 18  YLEKVRGPKYLPLTLIVPITLTYVVIFVTGFVGNIITCI 56


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 12/50 (24%), Positives = 19/50 (38%)

Query: 171 HEYTRPTDKYMTLHDENYRSQYRNDYTILQQTSEIPLISDDLEDEDVMKW 220
           + Y    + Y  L+  NYR  Y N   I Q    +P+   +     +  W
Sbjct: 87  NNYNYNNNNYKKLYCNNYRKLYYNINYIEQIPIPVPIYCGNFPPRPMGPW 136


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.135    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,947
Number of Sequences: 429
Number of extensions: 8377
Number of successful extensions: 27
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 6
length of query: 787
length of database: 140,377
effective HSP length: 63
effective length of query: 724
effective length of database: 113,350
effective search space: 82065400
effective search space used: 82065400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)