Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000401-TA|BGIBMGA000401-PA|IPR001320|Ionotropic
glutamate receptor, IPR001508|NMDA receptor
(787 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g35290.2 68417.m05015 glutamate receptor family protein (GLR3... 53 8e-07
At4g35290.1 68417.m05014 glutamate receptor family protein (GLR3... 53 8e-07
At2g32400.1 68415.m03959 glutamate receptor family protein (GLR3... 49 1e-05
At2g17260.1 68415.m01993 glutamate receptor family protein (GLR3... 49 1e-05
At3g04110.1 68416.m00435 glutamate receptor family protein (GLR1... 48 3e-05
At3g51480.1 68416.m05638 glutamate receptor family protein (GLR3... 46 7e-05
At5g27100.1 68418.m03235 glutamate receptor family protein (GLR2... 46 1e-04
At5g48400.2 68418.m05985 glutamate receptor family protein (GLR1... 45 2e-04
At5g48400.1 68418.m05984 glutamate receptor family protein (GLR1... 45 2e-04
At5g11210.1 68418.m01310 glutamate receptor family protein (GLR2... 44 5e-04
At5g48410.1 68418.m05986 glutamate receptor family protein (GLR1... 43 0.001
At2g24720.1 68415.m02953 glutamate receptor family protein (GLR2... 43 0.001
At2g32390.1 68415.m03958 glutamate receptor family protein (GLR3... 42 0.002
At2g24710.1 68415.m02952 glutamate receptor family protein (GLR2... 41 0.003
At1g42540.1 68414.m04905 glutamate receptor family protein (GLR3... 41 0.003
At1g05200.1 68414.m00524 glutamate receptor family protein (GLR3... 40 0.005
At2g29100.1 68415.m03537 glutamate receptor family protein (GLR2... 40 0.006
At2g29110.1 68415.m03538 glutamate receptor family protein (GLR2... 39 0.015
At2g29120.1 68415.m03539 glutamate receptor family protein (GLR2... 38 0.026
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 33 0.55
At4g31710.1 68417.m04501 glutamate receptor family protein (GLR2... 33 0.73
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 31 3.0
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 31 3.0
At4g13180.1 68417.m02050 short-chain dehydrogenase/reductase (SD... 31 3.0
At2g24070.1 68415.m02875 expressed protein contains Pfam domain,... 31 3.0
At5g11180.1 68418.m01307 glutamate receptor family protein (GLR2... 31 3.9
At2g22410.1 68415.m02657 pentatricopeptide (PPR) repeat-containi... 30 6.8
At1g60460.1 68414.m06807 hypothetical protein 30 6.8
>At4g35290.2 68417.m05015 glutamate receptor family protein (GLR3.2)
(GLUR2) identical to putative glutamate receptor
like-protein GLUR2 [Arabidopsis thaliana]
gi|13160471|gb|AAK13248; plant glutamate receptor
family, PMID:11379626
Length = 912
Score = 52.8 bits (121), Expect = 8e-07
Identities = 56/263 (21%), Positives = 118/263 (44%), Gaps = 21/263 (7%)
Query: 204 EIPLISDDLEDEDVMKWNGVVGDLVSGAAHMSFAALSVSSARAEVIDFSQPYFFSGISVL 263
E L D L++ + +N V ++ G +++ + R ++DF+QPY SG+ V+
Sbjct: 513 EFVLFGDGLKNPN---FNEFVNNVTIGVFDAVVGDIAIVTKRTRIVDFTQPYIESGLVVV 569
Query: 264 AAPNQRPDIPLLAFLLPFSPELWIAIFTSLNVTAIAVAIYEWLSPFGLNPWGRQRSKNFS 323
A + D P AFL PF+P +W + + W+ +N R +
Sbjct: 570 APVTKLNDTP-WAFLRPFTPPMWAVTAAFFLIVGSVI----WILEHRINDEFRGPPRK-Q 623
Query: 324 ISSALWVMWGLLCGHLVAFKAPKSWPNKFLINVWGGFSVIFVASYTANIAALIAGLFFHN 383
I + LW + + + S + ++ +W +I +SYTA++ +++ ++
Sbjct: 624 IVTILWFSFSTM--FFSHRENTVSTLGRAVLLIWLFVVLIITSSYTASLTSILTVQQLNS 681
Query: 384 AVDDFQGGDNWLSL--KVGTARSSVAEYYVQRNNPHLAQQMRRYALQDIEEGIQRLRSDS 441
+ +G D +S +VG S AE Y+ + ++A+ R L +E L++ +
Sbjct: 682 PI---RGVDTLISSSGRVGFQVGSYAENYM-IDELNIARS-RLVPLGSPKEYAAALQNGT 736
Query: 442 ISSVIAKYSSNGYMDILTEKWYG 464
+++++ Y+D+ ++ G
Sbjct: 737 VAAIV---DERPYVDLFLSEFCG 756
>At4g35290.1 68417.m05014 glutamate receptor family protein (GLR3.2)
(GLUR2) identical to putative glutamate receptor
like-protein GLUR2 [Arabidopsis thaliana]
gi|13160471|gb|AAK13248; plant glutamate receptor
family, PMID:11379626
Length = 912
Score = 52.8 bits (121), Expect = 8e-07
Identities = 56/263 (21%), Positives = 118/263 (44%), Gaps = 21/263 (7%)
Query: 204 EIPLISDDLEDEDVMKWNGVVGDLVSGAAHMSFAALSVSSARAEVIDFSQPYFFSGISVL 263
E L D L++ + +N V ++ G +++ + R ++DF+QPY SG+ V+
Sbjct: 513 EFVLFGDGLKNPN---FNEFVNNVTIGVFDAVVGDIAIVTKRTRIVDFTQPYIESGLVVV 569
Query: 264 AAPNQRPDIPLLAFLLPFSPELWIAIFTSLNVTAIAVAIYEWLSPFGLNPWGRQRSKNFS 323
A + D P AFL PF+P +W + + W+ +N R +
Sbjct: 570 APVTKLNDTP-WAFLRPFTPPMWAVTAAFFLIVGSVI----WILEHRINDEFRGPPRK-Q 623
Query: 324 ISSALWVMWGLLCGHLVAFKAPKSWPNKFLINVWGGFSVIFVASYTANIAALIAGLFFHN 383
I + LW + + + S + ++ +W +I +SYTA++ +++ ++
Sbjct: 624 IVTILWFSFSTM--FFSHRENTVSTLGRAVLLIWLFVVLIITSSYTASLTSILTVQQLNS 681
Query: 384 AVDDFQGGDNWLSL--KVGTARSSVAEYYVQRNNPHLAQQMRRYALQDIEEGIQRLRSDS 441
+ +G D +S +VG S AE Y+ + ++A+ R L +E L++ +
Sbjct: 682 PI---RGVDTLISSSGRVGFQVGSYAENYM-IDELNIARS-RLVPLGSPKEYAAALQNGT 736
Query: 442 ISSVIAKYSSNGYMDILTEKWYG 464
+++++ Y+D+ ++ G
Sbjct: 737 VAAIV---DERPYVDLFLSEFCG 756
>At2g32400.1 68415.m03959 glutamate receptor family protein (GLR3.7)
(GLR5) identical to Glr5 [Arabidopsis thaliana]
gi|6644388|gb|AAF21042; plant glutamate receptor family,
PMID:11379626
Length = 921
Score = 48.8 bits (111), Expect = 1e-05
Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 9/157 (5%)
Query: 220 WNGVVGDLVSGAAHMSFAALSVSSARAEVIDFSQPYFFSGISVLAAPNQRPDIPLLAFLL 279
+N ++ + G + +++ +R++++DFSQPY +G+ V+ N D FL
Sbjct: 518 YNHLIQMVTDGVYDAAVGDIAIVPSRSKLVDFSQPYASTGLVVVIPAND--DNATWIFLR 575
Query: 280 PFSPELWIAIFTSLNVTAIAVAIYEWLSPFGLNPWGRQRSKNFSISSALWVMWGLLCGHL 339
PF+ LW + S V A+ + W+ +N R + +S+ L + L
Sbjct: 576 PFTSRLWCVVLVSFLVIAVVI----WILEHRINEDFRGPPRR-QLSTMLLFSFSTLFKR- 629
Query: 340 VAFKAPKSWPNKFLINVWGGFSVIFVASYTANIAALI 376
+ S + ++ VW ++ ASYTAN+ +++
Sbjct: 630 -NQEDTISNLARLVMIVWLFLLMVLTASYTANLTSIL 665
>At2g17260.1 68415.m01993 glutamate receptor family protein (GLR3.1)
(GLR2) identical to putative glutamate receptor GLR2
[Arabidopsis thaliana] gi|4185740|gb|AAD09174; plant
glutamate receptor family, PMID:11379626
Length = 951
Score = 48.8 bits (111), Expect = 1e-05
Identities = 53/230 (23%), Positives = 109/230 (47%), Gaps = 16/230 (6%)
Query: 220 WNGVVGDLVSGAAHMSFAA-LSVSSARAEVIDFSQPYFFSGISVLAAPNQRPDIPLLAFL 278
+N +V + +G + +++ + R ++DF+QPY SG+ V+ AP R + AFL
Sbjct: 555 YNELVNKVTTGVDFDAVVGDIAIVTKRTRIVDFTQPYIESGL-VVVAPVTRLNENPWAFL 613
Query: 279 LPFSPELWIAIFTSLNVTAIAVAIYEWLSPFGLNPWGRQRSKNFSISSALWVMWGLLCGH 338
PF+ +W A+ S V + AI W+ +N R + I + LW + +
Sbjct: 614 RPFTLPMW-AVTASFFV-IVGAAI--WILEHRINDEFRGPPRR-QIITILWFTFSTM--F 666
Query: 339 LVAFKAPKSWPNKFLINVWGGFSVIFVASYTANIAALIAGLFFHNAVDDFQGGDNWLSL- 397
+ S + ++ +W +I +SYTA++ +++ ++ + +G D +S
Sbjct: 667 FSHRETTVSTLGRMVLLIWLFVVLIITSSYTASLTSILTVQQLNSPI---KGVDTLISST 723
Query: 398 -KVGTARSSVAEYYVQRNNPHLAQQMRRYALQDIEEGIQRLRSDSISSVI 446
++G S AE Y+ + ++A R L EE L++ ++++++
Sbjct: 724 GRIGFQVGSFAENYM-TDELNIASS-RLVPLASPEEYANALQNGTVAAIV 771
>At3g04110.1 68416.m00435 glutamate receptor family protein (GLR1.1)
(GLR1) identical to putative glutamate receptor (GLR1)
GB:AF079998 [Arabidopsis thaliana]; plant glutamate
receptor family, PMID:11379626
Length = 808
Score = 47.6 bits (108), Expect = 3e-05
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 239 LSVSSARAEVIDFSQPYFFSGISVLAAPNQRPDIPLLAFLLPFSPELWIAIFTSLNVTAI 298
++++S R+ +DF+ PY GI +L + + F PF LW+A +T I
Sbjct: 499 ITITSNRSLYVDFTLPYTDIGIGILTVKKKSQG--MWTFFDPFEKSLWLASGAFFVLTGI 556
Query: 299 AVAIYEW-LSPFGLNPWGRQRSKNFSISSALWVMWG-LLCGHLVAFKAPKSWPNKFLINV 356
V + E ++P WG+Q +S LW + ++ H + S +FL+ V
Sbjct: 557 VVWLVERSVNPEFQGSWGQQ------LSMMLWFGFSTIVFAHREKLQKMSS---RFLVIV 607
Query: 357 WGGFSVIFVASYTANIAA 374
W +I +SY+AN+ +
Sbjct: 608 WVFVVLILTSSYSANLTS 625
>At3g51480.1 68416.m05638 glutamate receptor family protein (GLR3.6)
plant glutamate receptor family, PMID:11379626
Length = 903
Score = 46.4 bits (105), Expect = 7e-05
Identities = 33/150 (22%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Query: 227 LVSGAAHMSFAALSVSSARAEVIDFSQPYFFSGISVLAAPNQRPDIPLLAFLLPFSPELW 286
+ +G +++ + R ++ DF+QPY SG+ V+ AP ++ +AFL PF+P++W
Sbjct: 522 ITTGVYDAGVGDITIITERTKMADFTQPYVESGL-VVVAPVRKLGSSAMAFLRPFTPQMW 580
Query: 287 IAIFTSLNVTAIAVAIYEWLSPFGLNPWGRQRSKNFSISSALWVMWGLLCGHLVAFKAPK 346
+ S + + W N R + I++ + L H +
Sbjct: 581 LIAAASFLIVGAVI----WCLEHKHNDEFRGPPRRQVITTFWFSFSTLFFSHR---ETTT 633
Query: 347 SWPNKFLINVWGGFSVIFVASYTANIAALI 376
S + ++ +W +I +SYTA++ +++
Sbjct: 634 SNLGRIVLIIWLFVVLIINSSYTASLTSIL 663
>At5g27100.1 68418.m03235 glutamate receptor family protein (GLR2.1)
(GLR3) plant glutamate receptor family, PMID:11379626
Length = 909
Score = 45.6 bits (103), Expect = 1e-04
Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 8/153 (5%)
Query: 237 AALSVSSARAEVIDFSQPYFFSGISVLAAPNQRPDIPLLAFLLPFSPELWIAIFTSLNVT 296
A ++SS R+ +DFS PY SG+ ++ FL+P + LW+ S +
Sbjct: 530 ADTTISSNRSMYVDFSLPYTPSGVGLVVPVKDSVRRSSTIFLMPLTLALWLISLLSFFII 589
Query: 297 AIAVAIYEWLSPFGLNP--WGRQRSKNFSISSALWVMWGLLCGHLVAFKAPK--SWPNKF 352
+ V W+ +NP G + + +I A + C HL A + S+ +
Sbjct: 590 GLVV----WVLEHRVNPDFDGPGQYQLSTIFCAAPIPKMSSCLHLNASTGERVLSFWARV 645
Query: 353 LINVWGGFSVIFVASYTANIAALIAGLFFHNAV 385
++ +W ++ SYTA++A+L+ H V
Sbjct: 646 VVIIWYFLVLVLTQSYTASLASLLTTQHLHPTV 678
>At5g48400.2 68418.m05985 glutamate receptor family protein (GLR1.2)
plant glutamate receptor family, PMID:11379626
Length = 867
Score = 44.8 bits (101), Expect = 2e-04
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 14/154 (9%)
Query: 239 LSVSSARAEVIDFSQPYFFSGISVLAAPNQRPDIPLLAFLLPFSPELWIAIFTSLNVTAI 298
++++S R+ +DF+ PY G+ ++AA + + F P +P LWI +T I
Sbjct: 521 ITITSDRSMYVDFTLPYTEMGLGIVAAKER----SMWVFFQPLTPNLWITSAAFFVLTGI 576
Query: 299 AVAIYEWLSPFGLNPWGRQRSKNFSISSALWVMWG-LLCGHLVAFKAPKSWPNKFLINVW 357
V WL N Q S I +W + L+ H + S +F++ VW
Sbjct: 577 IV----WLIERAENK-EFQGSWPQQIGVVIWFGFSTLVYAHREKLQHNLS---RFVVTVW 628
Query: 358 GGFSVIFVASYTANIAALI-AGLFFHNAVDDFQG 390
+I V SYTA + +++ NA +D+ G
Sbjct: 629 VFAVLILVTSYTATLTSMMTVQQIRFNANEDYVG 662
>At5g48400.1 68418.m05984 glutamate receptor family protein (GLR1.2)
plant glutamate receptor family, PMID:11379626
Length = 750
Score = 44.8 bits (101), Expect = 2e-04
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 14/154 (9%)
Query: 239 LSVSSARAEVIDFSQPYFFSGISVLAAPNQRPDIPLLAFLLPFSPELWIAIFTSLNVTAI 298
++++S R+ +DF+ PY G+ ++AA + + F P +P LWI +T I
Sbjct: 521 ITITSDRSMYVDFTLPYTEMGLGIVAAKER----SMWVFFQPLTPNLWITSAAFFVLTGI 576
Query: 299 AVAIYEWLSPFGLNPWGRQRSKNFSISSALWVMWG-LLCGHLVAFKAPKSWPNKFLINVW 357
V WL N Q S I +W + L+ H + S +F++ VW
Sbjct: 577 IV----WLIERAENK-EFQGSWPQQIGVVIWFGFSTLVYAHREKLQHNLS---RFVVTVW 628
Query: 358 GGFSVIFVASYTANIAALI-AGLFFHNAVDDFQG 390
+I V SYTA + +++ NA +D+ G
Sbjct: 629 VFAVLILVTSYTATLTSMMTVQQIRFNANEDYVG 662
>At5g11210.1 68418.m01310 glutamate receptor family protein (GLR2.5)
plant glutamate receptor family, PMID:11379626
Length = 829
Score = 43.6 bits (98), Expect = 5e-04
Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 8/138 (5%)
Query: 240 SVSSARAEVIDFSQPYFFSGISVLAAPNQRPDIPLLAFLLPFSPELWIAIFTSLNVTAIA 299
++ + R+ +DF+ PY +GI L + FL P + ELW+ S +
Sbjct: 468 TILANRSHYVDFALPYSETGIVFLVPVKDGKEKGEWVFLKPLTKELWLVTAASF----LY 523
Query: 300 VAIYEWLSPFGLNPWGRQRSKNFSISSALWVMWGLLCGHLVAFKAP-KSWPNKFLINVWG 358
+ I W+ + + R++ ISS + + L A + P +S+ + L+ VW
Sbjct: 524 IGIMVWIFEYQADEEFREQMIIDKISSVFYFSFSTL---FFAHRRPSESFFTRVLVVVWC 580
Query: 359 GFSVIFVASYTANIAALI 376
+I SYTA + +++
Sbjct: 581 FVLLILTQSYTATLTSML 598
>At5g48410.1 68418.m05986 glutamate receptor family protein (GLR1.3)
plant glutamate receptor family, PMID:11379626
Length = 860
Score = 42.7 bits (96), Expect = 0.001
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 13/139 (9%)
Query: 239 LSVSSARAEVIDFSQPYFFSGISVLAAPNQRPDIPLLAFLLPFSPELWIAIFTSLNVTAI 298
++++S R+ +DF+ P+ G+ ++A + + F P +P+LWI +T +
Sbjct: 518 ITITSNRSTYVDFTLPFTEMGLGIVAVKERS----MWVFFQPLTPDLWITSAFFFVLTGV 573
Query: 299 AVAIYEWLSPFGLNPWGRQRSKNFSISSALWVMWG-LLCGHLVAFKAPKSWPNKFLINVW 357
V WL N Q S I LW + L+ H K S +F++ VW
Sbjct: 574 IV----WLIERAENK-EFQGSWPQQIGVVLWFGFSTLVYAHREKLKHNLS---RFVVTVW 625
Query: 358 GGFSVIFVASYTANIAALI 376
+I ASYTA + +++
Sbjct: 626 VFAVLILTASYTATLTSMM 644
>At2g24720.1 68415.m02953 glutamate receptor family protein (GLR2.2)
plant glutamate receptor family, PMID:11379626
Length = 920
Score = 42.7 bits (96), Expect = 0.001
Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 221 NGVVGDLVSGAAHMSFAALSVSSARAEVIDFSQPYFFSGISVLAAPNQRPDIPLLAFLLP 280
N +V + G ++ + R+ +DF+ P+ SG+ ++ +FL P
Sbjct: 519 NDLVHQVYLGQFDAVVGDTTILANRSSFVDFTLPFMKSGVGLIVPLKDEVKRDKFSFLKP 578
Query: 281 FSPELWIAIFTSLNVTAIAVAIYEWLSPFGLNPWGRQRSKNFSISSALWVMWGLLCGHLV 340
S ELW+ T+L V V I W +N R + N+ S+ W + +
Sbjct: 579 LSIELWL---TTL-VFFFLVGISVWTLEHRVNSDFRGPA-NYQASTIFWFAFSTMV--FA 631
Query: 341 AFKAPKSWPNKFLINVWGGFSVIFVASYTANIAALI 376
+ S+ + L+ W ++ SYTA++A+L+
Sbjct: 632 PRERVLSFGARSLVVTWYFVLLVLTQSYTASLASLL 667
>At2g32390.1 68415.m03958 glutamate receptor family protein (GLR3.5)
plant glutamate receptor family, PMID:11379626
Length = 895
Score = 41.5 bits (93), Expect = 0.002
Identities = 34/157 (21%), Positives = 75/157 (47%), Gaps = 8/157 (5%)
Query: 220 WNGVVGDLVSGAAHMSFAALSVSSARAEVIDFSQPYFFSGISVLAAPNQRPDIPLLAFLL 279
++ ++ ++ + ++ +++ + R + +DF+QP+ SG+ V+A P +FL
Sbjct: 487 YDNLISEVAANIFDVAVGDVTIITNRTKFVDFTQPFIESGLVVVAPVKGAKSSP-WSFLK 545
Query: 280 PFSPELWIAIFTSLNVTAIAVAIYEWLSPFGLNPWGRQRSKNFSISSALWVMWGLLCGHL 339
PF+ E+W A+ +L + AV W+ N R + I + W + +
Sbjct: 546 PFTIEMW-AVTGALFLFVGAVI---WILEHRFNEEFRGPPRR-QIITVFWFSFSTM--FF 598
Query: 340 VAFKAPKSWPNKFLINVWGGFSVIFVASYTANIAALI 376
+ S +F++ VW +I +SYTA++ +++
Sbjct: 599 SHRENTVSTLGRFVLLVWLFVVLIINSSYTASLTSIL 635
>At2g24710.1 68415.m02952 glutamate receptor family protein (GLR2.3)
plant glutamate receptor family, PMID:11379626
Length = 895
Score = 41.1 bits (92), Expect = 0.003
Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 7/132 (5%)
Query: 245 RAEVIDFSQPYFFSGISVLAAPNQRPDIPLLAFLLPFSPELWIAIFTSLNVTAIAVAIYE 304
R+ +DF+ P+ SG+ ++ + F+ P S +LW+ F S + V
Sbjct: 543 RSSYVDFTFPFIKSGVGLIVEMTDPVKRDYILFMKPLSWKLWLTSFISFFLVGCTV---- 598
Query: 305 WLSPFGLNPWGRQRSKNFSISSALWVMWGLLCGHLVAFKAPKSWPNKFLINVWGGFSVIF 364
W+ + NP F S+ W + + + S+ + L+ W ++
Sbjct: 599 WVLEYKRNP-DFSGPPRFQASTICWFAFSTMV--FAPRERVFSFWARALVIAWYFLVLVL 655
Query: 365 VASYTANIAALI 376
SYTA++A+L+
Sbjct: 656 TQSYTASLASLL 667
>At1g42540.1 68414.m04905 glutamate receptor family protein (GLR3.3)
plant glutamate receptor family, PMID:11379626
Length = 933
Score = 41.1 bits (92), Expect = 0.003
Identities = 32/138 (23%), Positives = 65/138 (47%), Gaps = 8/138 (5%)
Query: 239 LSVSSARAEVIDFSQPYFFSGISVLAAPNQRPDIPLLAFLLPFSPELWIAIFTSLNVTAI 298
+++ + R +++DF+QPY SG+ V+ AP ++ + AFL PF+ +W +
Sbjct: 544 VAIVTNRTKIVDFTQPYAASGL-VVVAPFKKLNSGAWAFLRPFNRLMWAV----TGCCFL 598
Query: 299 AVAIYEWLSPFGLNPWGRQRSKNFSISSALWVMWGLLCGHLVAFKAPKSWPNKFLINVWG 358
V I W+ N R K + + LW + + + S + ++ +W
Sbjct: 599 FVGIVVWILEHRTNDEFRGPPKRQCV-TILWFSFSTM--FFAHRENTVSTLGRLVLIIWL 655
Query: 359 GFSVIFVASYTANIAALI 376
+I +SYTA++ +++
Sbjct: 656 FVVLIINSSYTASLTSIL 673
>At1g05200.1 68414.m00524 glutamate receptor family protein (GLR3.4)
plant glutamate receptor family, PMID:11379626
Length = 959
Score = 40.3 bits (90), Expect = 0.005
Identities = 18/67 (26%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 220 WNGVVGDLVSGAAHMSFAALSVSSARAEVIDFSQPYFFSGISVLAAPNQRPDIPLLAFLL 279
++ +V ++V+ ++ +++ + R +DF+QP+ SG+ V+A + P +FL
Sbjct: 552 YDNLVNEVVADNFDVAVGDITIVTNRTRYVDFTQPFIESGLVVVAPVKEAKSSP-WSFLK 610
Query: 280 PFSPELW 286
PF+ E+W
Sbjct: 611 PFTIEMW 617
>At2g29100.1 68415.m03537 glutamate receptor family protein (GLR2.9)
plant glutamate receptor family, PMID:11379626
Length = 940
Score = 39.9 bits (89), Expect = 0.006
Identities = 35/175 (20%), Positives = 75/175 (42%), Gaps = 9/175 (5%)
Query: 204 EIP--LISDDLEDEDVMKWNGVVGDLVSGAAHMSFAALSVSSARAEVIDFSQPYFFSGIS 261
E+P +I + + E +N +V + +++++ R+ DF+ P+ SG+S
Sbjct: 486 ELPYLVIPEYVSFESPNNYNNLVYQVYDKTWDAVVGDITITANRSLYADFTLPFTESGVS 545
Query: 262 VLAAPNQRPDIPLLAFLLPFSPELWIAIFTSLNVTAIAVAIYEWLSPFGLNPWGRQRSKN 321
++ + FL P+S ELW+ + + + WL +N R
Sbjct: 546 MMVPVRDNENKDTWVFLEPWSLELWV----TTGCFFVFIGFVVWLFEHRVNTDFR-GPPQ 600
Query: 322 FSISSALWVMWGLLCGHLVAFKAPKSWPNKFLINVWGGFSVIFVASYTANIAALI 376
+ I ++LW + + + S +F++ VW ++ SYTA++ + +
Sbjct: 601 YQIGTSLWFSFSTMV--FAHRENVVSNLARFVVVVWCFVVLVLTQSYTASLTSFL 653
>At2g29110.1 68415.m03538 glutamate receptor family protein (GLR2.8)
(GLUR9) plant glutamate receptor family, PMID:11379626
Length = 947
Score = 38.7 bits (86), Expect = 0.015
Identities = 40/181 (22%), Positives = 76/181 (41%), Gaps = 15/181 (8%)
Query: 196 YTILQQTSEIPLISDDLEDEDVMKWNGVVGDLVSGAAHMSFAALSVSSARAEVIDFSQPY 255
Y+++ Q DD +D NG + D V G +++++ R+ DF+ PY
Sbjct: 499 YSVIPQYYRFESPDDDYDDLVYKVDNGTL-DAVVGD-------VTITAYRSLYADFTLPY 550
Query: 256 FFSGISVLAAPNQRPDIPLLAFLLPFSPELWIAIFTSLNVTAIAVAIYEWLSPFGLNPWG 315
SG+S++ + FL P+ +LW+ T+ I + WL +N
Sbjct: 551 TESGVSMMVPVRDNENKNTWVFLKPWGLDLWVT--TACFFVLIGFVV--WLFEHRVNTDF 606
Query: 316 RQRSKNFSISSALWVMWGLLCGHLVAFKAPKSWPNKFLINVWGGFSVIFVASYTANIAAL 375
R + I ++ W + + + S +F++ VW ++ SYTAN+ +
Sbjct: 607 R-GPPHHQIGTSFWFSFSTMV--FAHREKVVSNLARFVVVVWCFVVLVLTQSYTANLTSF 663
Query: 376 I 376
+
Sbjct: 664 L 664
>At2g29120.1 68415.m03539 glutamate receptor family protein (GLR2.7)
plant glutamate receptor family, PMID:11379626
Length = 926
Score = 37.9 bits (84), Expect = 0.026
Identities = 31/155 (20%), Positives = 69/155 (44%), Gaps = 9/155 (5%)
Query: 220 WNGVVGDLVSGAAHMSFAALSVSSARAEVIDFSQPYFFSGISVLAAPNQRPDIPLLAFLL 279
++ +V + +GA +++ + R+ +DF+ PY SG+S++ + FL
Sbjct: 496 YDEMVYQVYTGAYDAVVGDVTIVANRSLYVDFTLPYTESGVSMMVPLKDNKN--TWVFLR 553
Query: 280 PFSPELWIAIFTSLNVTAIAVAIYEWLSPFGLNPWGRQRSKNFSISSALWVMWGLLCGHL 339
P+S +LW+ + + W+ +N R + I ++ W + + +
Sbjct: 554 PWSLDLWVTTACFF----VFIGFIVWILEHRVNTDFR-GPPHHQIGTSFWFAFSTM--NF 606
Query: 340 VAFKAPKSWPNKFLINVWGGFSVIFVASYTANIAA 374
+ S +F++ VW ++ + SYTAN+ +
Sbjct: 607 AHREKVVSNLARFVVLVWCFVVLVLIQSYTANLTS 641
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 33.5 bits (73), Expect = 0.55
Identities = 43/171 (25%), Positives = 63/171 (36%), Gaps = 9/171 (5%)
Query: 529 RSRNIMFFSQKEHEQRRRRKSKAQLYEMIQAIRRV----QQRDHSLGSIKEQEPVDXXXX 584
+SR+ S R+RR S ++ +++RR ++R HS + + P+
Sbjct: 235 KSRSTSQSSDASISPRKRRLSNSRRRSRSRSVRRSLSPRRRRIHSPFRSRSRSPIRRHRR 294
Query: 585 XXXXXXXKFLSPSPDTSHRSPRQGRSPRQLRSPKGRRKRCSLAGLNVRRFSTDSVLGSDS 644
+ SP+P RSP R+ SP RR+R R T S
Sbjct: 295 PTHEGRRQ--SPAPSRRRRSPSPPARRRRSPSPPARRRRSPSPPARRHRSPTPPARQRRS 352
Query: 645 VSNIYERTCHNIGRRLSRDVS---CLTNSPPDLNTRLRTPSPMIRRTEASS 692
S R R R S SP R R+PSP+ RR + S
Sbjct: 353 PSPPARRHRSPPPARRRRSPSPPARRRRSPSPPARRRRSPSPLYRRNRSPS 403
Score = 32.7 bits (71), Expect = 0.97
Identities = 41/156 (26%), Positives = 55/156 (35%), Gaps = 7/156 (4%)
Query: 544 RRRRKSKAQLYEMIQAIRRVQQ--RDHSLGSIKE-QEPVDXXXXXXXXXXXKFLSPSPDT 600
RRR +S++ + RR+ R S I+ + P + SPSP
Sbjct: 258 RRRSRSRSVRRSLSPRRRRIHSPFRSRSRSPIRRHRRPTHEGRRQSPAPSRRRRSPSPPA 317
Query: 601 SHR-SPRQGRSPRQLRSPKGRRKRCSLAGLNVRRFSTDSVLGSDSVSNIYERTCHNIGRR 659
R SP R+ SP RR R RR + S R + R
Sbjct: 318 RRRRSPSPPARRRRSPSPPARRHRSPTPPARQRRSPSPPARRHRSPPPARRRRSPSPPAR 377
Query: 660 LSRDVSCLTN---SPPDLNTRLRTPSPMIRRTEASS 692
R S SP L R R+PSP+ RR + S
Sbjct: 378 RRRSPSPPARRRRSPSPLYRRNRSPSPLYRRNRSRS 413
>At4g31710.1 68417.m04501 glutamate receptor family protein (GLR2.4)
plant glutamate receptor family, PMID:11379626
Length = 898
Score = 33.1 bits (72), Expect = 0.73
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 240 SVSSARAEVIDFSQPYFFSGISVLAAPNQRPDIPLLAFLLPFSPELWIAIFTSLNVTAIA 299
++ + R+ +DF+ PY SG+ ++ L F P +P LW S V
Sbjct: 539 TILANRSSYVDFTLPYTTSGVGMVVPLKDNVARSSLIFFKPLTPGLWGMTLGSFFVVGFV 598
Query: 300 VAIYE 304
V I E
Sbjct: 599 VWILE 603
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 31.1 bits (67), Expect = 3.0
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 603 RSPRQGRSPRQLRSPKGRRKRCSLAGLNVRRFSTDSVLGSD----SVSNIYE-RTCHNIG 657
RSPR+ RSPR+ RSP R+R + RR S D D S S Y+ R H
Sbjct: 119 RSPRRSRSPRRSRSPP--RRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEK 176
Query: 658 RRLSRDVSCLTNSPPDLNTRLR 679
R R + ++ PD R+R
Sbjct: 177 DRDHRRRTRSRSASPDEKRRVR 198
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 31.1 bits (67), Expect = 3.0
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 603 RSPRQGRSPRQLRSPKGRRKRCSLAGLNVRRFSTDSVLGSD----SVSNIYE-RTCHNIG 657
RSPR+ RSPR+ RSP R+R + RR S D D S S Y+ R H
Sbjct: 119 RSPRRSRSPRRSRSPP--RRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEK 176
Query: 658 RRLSRDVSCLTNSPPDLNTRLR 679
R R + ++ PD R+R
Sbjct: 177 DRDHRRRTRSRSASPDEKRRVR 198
>At4g13180.1 68417.m02050 short-chain dehydrogenase/reductase (SDR)
family protein similar to short-chain type
dehydrogenase/reductase SP:Q08632 [Picea abies]
Length = 263
Score = 31.1 bits (67), Expect = 3.0
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 40 GRFVA-HGHSDGARTIFRIVTALAPPFVMEGELDEDGQCLRGLLCHRPQTSDRDNLTLAF 98
GR +A H HS GAR V++ + ++ EL++ Q L+ + + SD D + F
Sbjct: 28 GREIAIHLHSLGARVTINYVSSSSKAELLVSELNDSSQ-LKSAIAVKADVSDPDQINNLF 86
Query: 99 NELER 103
++ E+
Sbjct: 87 DQTEQ 91
>At2g24070.1 68415.m02875 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 609
Score = 31.1 bits (67), Expect = 3.0
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 658 RRLSRDVSCLTNSPPDLNTRLRTPSPMIRRT-EASSTRSYQDVSLRSENYVSTDAPTSRA 716
R + +VS SP TR R PSP++ RT +SS S+ ++ +E PT+
Sbjct: 41 RARTMEVSSRYRSPTPTKTR-RCPSPIVTRTAPSSSPESFLKRAVSAERNRGPSTPTTPV 99
Query: 717 SIDILI 722
S D+L+
Sbjct: 100 S-DVLV 104
>At5g11180.1 68418.m01307 glutamate receptor family protein (GLR2.6)
plant glutamate receptor family, PMID:11379626
Length = 906
Score = 30.7 bits (66), Expect = 3.9
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 240 SVSSARAEVIDFSQPYFFSGISVLAAPNQRPDIPLLAFLLPFSPELWI---AIFTSLNVT 296
++ + R+ +DF+ PY +GI V+ + FL P + ELW A F + +
Sbjct: 546 TILANRSTYVDFALPYSETGIVVVVPVKDEREKGKWVFLKPLTRELWFLTAASFLYIGIM 605
Query: 297 AIAVAIYEWLSPFGLNP 313
+ + L+ L P
Sbjct: 606 SYTATLTSMLTVQELRP 622
>At2g22410.1 68415.m02657 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 681
Score = 29.9 bits (64), Expect = 6.8
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 210 DDLEDEDVMKWNGVVGDLVSGAAHMSFAAL--SVSSARAEVIDFSQPYFFSGISVLAAPN 267
DD+E++DV+ WN ++G V AL + ++ + + + + S S L A +
Sbjct: 347 DDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALD 406
Query: 268 QRPDIPLLAFLLPFSPELWIAIFTSL-NVTAIAVAIYEWLSPF 309
I + ++ +S L +A+ TSL ++ A I E LS F
Sbjct: 407 --VGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVF 447
>At1g60460.1 68414.m06807 hypothetical protein
Length = 356
Score = 29.9 bits (64), Expect = 6.8
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 365 VASYTANIAALIAGLFFHNAVDDFQGGD-NWLSLKVGTARSSVAEYYVQR 413
+ SY ++A IAGL F + DFQG + L + E Y+QR
Sbjct: 258 ICSYVPDLARSIAGLIFSSTDLDFQGDCLSVLGFQTQEVERDTVENYIQR 307
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.321 0.135 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,826,201
Number of Sequences: 28952
Number of extensions: 672652
Number of successful extensions: 1687
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1608
Number of HSP's gapped (non-prelim): 55
length of query: 787
length of database: 12,070,560
effective HSP length: 87
effective length of query: 700
effective length of database: 9,551,736
effective search space: 6686215200
effective search space used: 6686215200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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