Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000400-TA|BGIBMGA000400-PA|undefined
         (265 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   2.4  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   2.4  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   5.5  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 27/114 (23%), Positives = 40/114 (35%), Gaps = 8/114 (7%)

Query: 141 HNINDKTQFVEDDIAEFENMKDGSENFAKDSFVRNKRNDVDNNTVKYSTDYRPPVMVMDK 200
           +++ DK   + +    F    + +E F ++      RN    N   Y       V   ++
Sbjct: 284 YSMFDKLLLMSEGRTAFLGSPEEAETFFRELEAPCPRN---YNPADYFIQLLAIVPEKEE 340

Query: 201 ISNIAVNL-----NRVYIRAAVRLMVGALRRVLHACDAWSAQAQFFSDATASCW 249
            S  AVNL      R  I   + L      R     D W +   F S   ASCW
Sbjct: 341 SSRQAVNLICDKFERSNIGVKIALEAATTEREGGYHDIWMSGESFKSPYKASCW 394


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 27/114 (23%), Positives = 40/114 (35%), Gaps = 8/114 (7%)

Query: 141 HNINDKTQFVEDDIAEFENMKDGSENFAKDSFVRNKRNDVDNNTVKYSTDYRPPVMVMDK 200
           +++ DK   + +    F    + +E F ++      RN    N   Y       V   ++
Sbjct: 284 YSMFDKLLLMSEGRTAFLGSPEEAETFFRELEAPCPRN---YNPADYFIQLLAIVPEKEE 340

Query: 201 ISNIAVNL-----NRVYIRAAVRLMVGALRRVLHACDAWSAQAQFFSDATASCW 249
            S  AVNL      R  I   + L      R     D W +   F S   ASCW
Sbjct: 341 SSRQAVNLICDKFERSNIGVKIALEAATTEREGGYHDIWMSGESFKSPYKASCW 394


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/38 (21%), Positives = 17/38 (44%)

Query: 153 DIAEFENMKDGSENFAKDSFVRNKRNDVDNNTVKYSTD 190
           D+    +  +  E++     ++   ND  N  +K+S D
Sbjct: 96  DLFRGSSTPESPEHYYNQKTLQANNNDASNGNLKFSID 133



 Score = 21.0 bits (42), Expect = 9.6
 Identities = 13/49 (26%), Positives = 20/49 (40%)

Query: 141 HNINDKTQFVEDDIAEFENMKDGSENFAKDSFVRNKRNDVDNNTVKYST 189
           H  N KT    ++ A   N+K   +N  K  F R   + ++    K  T
Sbjct: 109 HYYNQKTLQANNNDASNGNLKFSIDNILKADFGRRITDPINIRKCKPKT 157


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.325    0.136    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,721
Number of Sequences: 317
Number of extensions: 1941
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 4
length of query: 265
length of database: 114,650
effective HSP length: 56
effective length of query: 209
effective length of database: 96,898
effective search space: 20251682
effective search space used: 20251682
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 42 (21.0 bits)