Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000400-TA|BGIBMGA000400-PA|undefined
         (265 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48586| Best HMM Match : DUF285 (HMM E-Value=1.7)                    32   0.56 
SB_26764| Best HMM Match : ANF_receptor (HMM E-Value=0.001)            32   0.56 
SB_14385| Best HMM Match : ANF_receptor (HMM E-Value=6.5e-35)          32   0.56 
SB_6256| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.3  
SB_10878| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_58405| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_56482| Best HMM Match : HEAT (HMM E-Value=1.9e-16)                  30   2.2  
SB_47687| Best HMM Match : SCP (HMM E-Value=1.8e-16)                   30   2.2  
SB_40852| Best HMM Match : SURF6 (HMM E-Value=3.8)                     29   3.0  
SB_18220| Best HMM Match : Vicilin_N (HMM E-Value=4.3)                 29   5.2  
SB_13431| Best HMM Match : Seryl_tRNA_N (HMM E-Value=2.3)              28   6.9  
SB_7706| Best HMM Match : Spectrin (HMM E-Value=0)                     28   9.1  

>SB_48586| Best HMM Match : DUF285 (HMM E-Value=1.7)
          Length = 589

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 134 SKDFDVFHNINDKTQFVEDDIAEFENMKDGSENFAKDSFVRNKRNDV--DNNTVKYSTDY 191
           +K  DV  +I+  T+   DD+A+  +    +++ AKDS    K +DV  D++TV  + D 
Sbjct: 316 TKADDVAKDISTVTK--ADDVAKDSSTVTKADDVAKDSSTVTKADDVAKDSSTVTKADDV 373

Query: 192 RPPVMVMDKISNIAVNLNRV 211
              +  + K  ++A +++ V
Sbjct: 374 AKDISTVTKADDVAKDMSTV 393



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 134 SKDFDVFHNINDKTQFVEDDIAEFENMKDGSENFAKDSFVRNKRNDV--DNNTVKYSTDY 191
           +K  DV  +I+  T+   DD+A+  +    +++ AKDS    K +DV  D +TV  S D 
Sbjct: 134 TKADDVAKDISTVTK--ADDVAKDSSTVTKADDVAKDSSTVTKADDVAKDISTVTNSDDV 191

Query: 192 RPPVMVMDKISNIAVNLNRV 211
              +  + K  ++A + + V
Sbjct: 192 AKDISTVTKADDVAKDSSTV 211



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 132 DASKDFDVFHNINDKTQFVE-----DDIAEFENMKDGSENFAKDSFVRNKRNDV--DNNT 184
           D +KD     N +D  + +      DD+A+  +    S++ AKD     K +DV  D +T
Sbjct: 385 DVAKDMSTVTNSDDVAKDISTVTNSDDVAKDISTVTNSDDVAKDISTVTKADDVAKDVST 444

Query: 185 VKYSTDYRPPVMVMDKISNIAVNLNRV 211
           V  + D    +  + K  ++A +++ V
Sbjct: 445 VTKADDVAKDISTVTKADDVAKDISTV 471



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 134 SKDFDVFHNINDKTQFVEDDIAEFENMKDGSENFAKDSFVRNKRNDV--DNNTVKYSTDY 191
           +K  DV  +I+  T    DD+A+  +    +++ AKDS    K +DV  D +TV  + D 
Sbjct: 173 TKADDVAKDISTVTN--SDDVAKDISTVTKADDVAKDSSTVTKADDVAKDISTVTKADDV 230

Query: 192 RPPVMVMDKISNIAVNLNRV 211
              +  + K  ++A +++ V
Sbjct: 231 AKDISTVTKADDVAKDISTV 250


>SB_26764| Best HMM Match : ANF_receptor (HMM E-Value=0.001)
          Length = 342

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 53  TTPSHLHLAYTIANDM-LPLEIRLEITAR----ETLQALRRLAEISRLTRGIVVLICDIH 107
           TT  HL  A T+   + +P +++    AR         L +L EI R    ++VL C   
Sbjct: 168 TTRQHLAGAETLLRKLTMPKQLQTVSLARVDPDNNTDLLNKLGEIKRSETVVIVLHCFAE 227

Query: 108 YAKLVIDEAKRLNMLDGHFFWLWID 132
            AKL++  A  L + +    W+  D
Sbjct: 228 EAKLILQAAVSLGVYNIDRVWIGTD 252


>SB_14385| Best HMM Match : ANF_receptor (HMM E-Value=6.5e-35)
          Length = 1003

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 3/75 (4%)

Query: 64  IANDMLPLEIR-LEITARETLQALRRLAE-ISRLTRGIVVLICDIHYAKLVIDEAKRLNM 121
           ++ND+  + +    +T      +LR L E I++    IVVL C  HY  +V+  A+   M
Sbjct: 152 LSNDVEVVNVEHFYVTPELIKNSLRMLLELINKGGARIVVLKCRAHYVPVVMAIAREKGM 211

Query: 122 LDGHFFWLWIDASKD 136
           L G + W++ +++ D
Sbjct: 212 L-GDWVWIFTESALD 225


>SB_6256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 11/98 (11%)

Query: 131 IDASKD-FDVFHNINDKTQFVEDDIAEFENMKDGSENFAKD-SFVRNKRNDVDNNTVKYS 188
           ID  KD FD+F  I DK       I+ F N   G++   KD  F+R       N   KY 
Sbjct: 13  IDGKKDRFDIFFAIWDK------QISIFRN---GTQIAEKDVKFLRRNEKQKANKPYKYK 63

Query: 189 TDYRPPVMVMDKISNIAVNLNRVYIRAAVRLMVGALRR 226
             Y   V V   +  + V    VY+R    ++   +R+
Sbjct: 64  NSYVVYVRVRQYVVYVRVGQYVVYVRVRQYVVYARVRQ 101


>SB_10878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/72 (25%), Positives = 27/72 (37%)

Query: 133 ASKDFDVFHNINDKTQFVEDDIAEFENMKDGSENFAKDSFVRNKRNDVDNNTVKYSTDYR 192
           A+ D  VFH  N + +        F   KD  ENF K      +          Y+  Y 
Sbjct: 125 AADDETVFHEENPEMKVYATSFGGFAKAKDWRENFEKLKTALGRDGKEFVKGYYYTAGYD 184

Query: 193 PPVMVMDKISNI 204
           PP  +  +++ I
Sbjct: 185 PPFRLWGRVNEI 196


>SB_58405| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 757

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 133 ASKDFDVFHNINDKTQFVEDDIAEFENMKD 162
           ASK F+    +N++T  VEDD+  F + KD
Sbjct: 578 ASKVFEEAAEVNNETSTVEDDVLHFRDDKD 607


>SB_56482| Best HMM Match : HEAT (HMM E-Value=1.9e-16)
          Length = 425

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 187 YSTDYRPPVMVMDKISNIAVNL--NRVY-IRAAVRLMVGALRRVLHACDAWSAQAQFFSD 243
           Y +D   P  V   I  IA+ L  +RV  +R     ++G L R LH C   S+  +F SD
Sbjct: 140 YLSDLYTPAAVQQFICPIAITLATDRVADVRTIAFRLIGVLLRRLHGCKDDSSVRKFVSD 199


>SB_47687| Best HMM Match : SCP (HMM E-Value=1.8e-16)
          Length = 600

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/60 (30%), Positives = 24/60 (40%)

Query: 134 SKDFDVFHNINDKTQFVEDDIAEFENMKDGSENFAKDSFVRNKRNDVDNNTVKYSTDYRP 193
           SKD       N+ +Q  E ++A   NM  G E   K S    K  + DN + K      P
Sbjct: 7   SKDTPKSPEQNNSSQQTEKELANGHNMSKGDETKEKPSHRAEKEQEKDNKSSKEGETKEP 66


>SB_40852| Best HMM Match : SURF6 (HMM E-Value=3.8)
          Length = 296

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 129 LWIDASKDFDVFHNINDKTQFVEDDIAEFENMKDGSENFAKDSFVRNKRNDVDNNTVKYS 188
           L I + K+  + H  +D  +    D+   +  K+  E+   + F RN+R+ V NN  K +
Sbjct: 66  LKISSEKEGKISHKSSDPGENFPSDLTFQKWRKEEGESREDEVFARNRRHSVGNNPRK-A 124

Query: 189 TDYR 192
             YR
Sbjct: 125 MSYR 128


>SB_18220| Best HMM Match : Vicilin_N (HMM E-Value=4.3)
          Length = 188

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 178 NDVDNNTVKYSTDYRPPVMVMDKISNIAVNLN 209
           N  DNN +  +  + PP++V +K+   A+N N
Sbjct: 153 NGFDNNGIHSAICHMPPILVPEKVGAAAMNSN 184


>SB_13431| Best HMM Match : Seryl_tRNA_N (HMM E-Value=2.3)
          Length = 743

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 125 HFFWLWIDASKDFDVFHN-INDKTQFVEDDIAEFENMKDGSENFAKDSFVRNKRNDVDNN 183
           +F W  ID +   D+F   +      V  ++   E  K   E F +D+F+R +     N 
Sbjct: 541 NFRWRGIDQNSQLDLFDKRLWGDEDGVNVELLTEEESKRRKERFERDTFLREELKKGRNE 600

Query: 184 TVKYSTD 190
            + + TD
Sbjct: 601 NMIHDTD 607


>SB_7706| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 686

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 132 DASKDFDVFHNINDKTQFVEDDIAEFENM-KDGSENFAKDSFVRNKRNDVDN 182
           D  +D     N+  K Q VE DIA  E+M  + S+  A+ + +     DVD+
Sbjct: 233 DFGRDLASVQNLIKKHQLVEADIAAHEDMAANRSDKLAESNALHTFYRDVDD 284


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.325    0.136    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,391,589
Number of Sequences: 59808
Number of extensions: 265651
Number of successful extensions: 948
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 932
Number of HSP's gapped (non-prelim): 19
length of query: 265
length of database: 16,821,457
effective HSP length: 81
effective length of query: 184
effective length of database: 11,977,009
effective search space: 2203769656
effective search space used: 2203769656
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)