Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000400-TA|BGIBMGA000400-PA|undefined
         (265 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal ne...    32   0.37 
Z69646-6|CAD44142.1|  287|Caenorhabditis elegans Hypothetical pr...    31   0.64 
Z69646-5|CAA93474.1|  288|Caenorhabditis elegans Hypothetical pr...    31   0.64 
Z81147-11|CAL69739.1|  323|Caenorhabditis elegans Hypothetical p...    31   1.1  
U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr...    31   1.1  
M25478-1|AAA27992.1|  168|Caenorhabditis elegans collagen protein.     30   1.5  
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p...    30   2.0  
Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z81492-10|CAB04029.2|  322|Caenorhabditis elegans Hypothetical p...    28   7.9  
Z81133-4|CAI70414.1|  199|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal
            neurexin-like protein 1 protein.
          Length = 1655

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 142  NINDKTQFVEDDIAEFENMKDGSENFAKDSFVRNKRNDVDNNTVKYSTD 190
            + N +  F  DD  EF  + D  +N   D  VRN+ +D DN T+++  D
Sbjct: 1540 DFNKENTFDYDDEDEFAGIAD--DNVTDDVTVRNEVDDSDNETIRHIDD 1586


>Z69646-6|CAD44142.1|  287|Caenorhabditis elegans Hypothetical
           protein F57C7.3b protein.
          Length = 287

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 19/53 (35%), Positives = 27/53 (50%)

Query: 144 NDKTQFVEDDIAEFENMKDGSENFAKDSFVRNKRNDVDNNTVKYSTDYRPPVM 196
           NDK   VE+D  + E+  +  E+  +D    N  ND D  T   +T YRP V+
Sbjct: 134 NDKEIKVEEDEDDDEDEDEDDEDDEEDFADENIHNDEDFFTTTTTTTYRPIVV 186


>Z69646-5|CAA93474.1|  288|Caenorhabditis elegans Hypothetical
           protein F57C7.3a protein.
          Length = 288

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 19/53 (35%), Positives = 27/53 (50%)

Query: 144 NDKTQFVEDDIAEFENMKDGSENFAKDSFVRNKRNDVDNNTVKYSTDYRPPVM 196
           NDK   VE+D  + E+  +  E+  +D    N  ND D  T   +T YRP V+
Sbjct: 135 NDKEIKVEEDEDDDEDEDEDDEDDEEDFADENIHNDEDFFTTTTTTTYRPIVV 187


>Z81147-11|CAL69739.1|  323|Caenorhabditis elegans Hypothetical
           protein T09E11.12 protein.
          Length = 323

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 126 FFWLWIDASKDFDVFHNINDKTQFVEDDIAEFENMKDGSE 165
           F++ ++  SK FD +   +D T F  D + E+ N  D S+
Sbjct: 146 FYYSYVHISKSFDWYLKADDDTYFAMDHLREYLNTLDPSK 185


>U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical
           protein T13H2.5b protein.
          Length = 1092

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 147 TQFVEDDIAEFENMKDGSENFAKDSFVRNKR-NDVDNNTVKYSTDYRPPVMVMDKISNIA 205
           TQ+++  I + +N K+G+    + S V   R ND++   ++Y+  Y P  M+   + N++
Sbjct: 122 TQYIDKTI-DLDNSKNGTNVDEEQSNVLKLRENDLNREMLRYANRYHPSTML--AMGNLS 178

Query: 206 VN 207
           +N
Sbjct: 179 IN 180


>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical protein
            T13H2.5a protein.
          Length = 2471

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 147  TQFVEDDIAEFENMKDGSENFAKDSFVRNKR-NDVDNNTVKYSTDYRPPVMVMDKISNIA 205
            TQ+++  I + +N K+G+    + S V   R ND++   ++Y+  Y P  M+   + N++
Sbjct: 1501 TQYIDKTI-DLDNSKNGTNVDEEQSNVLKLRENDLNREMLRYANRYHPSTML--AMGNLS 1557

Query: 206  VN 207
            +N
Sbjct: 1558 IN 1559


>M25478-1|AAA27992.1|  168|Caenorhabditis elegans collagen protein.
          Length = 168

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/39 (38%), Positives = 19/39 (48%)

Query: 139 VFHNINDKTQFVEDDIAEFENMKDGSENFAKDSFVRNKR 177
           VFH  +D   FVED   E    KD S   A+  F R ++
Sbjct: 25  VFHIYSDINSFVEDSHRELGEFKDDSVRMARSVFGRRRQ 63


>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical
           protein F18C12.2b protein.
          Length = 2271

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 148 QFVEDDIAEFENMKDGSENFAK-DSFVRNKRNDVDNNTVKYSTDYRPPVM 196
           Q++ +D    + +++G  N +K D +  + RN   NN +++S+DY   ++
Sbjct: 49  QWLYEDFLSVKPLRNGGSNDSKQDEYKIHVRNRGKNNDMRFSSDYTTDIL 98


>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical
           protein F18C12.2a protein.
          Length = 2279

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 148 QFVEDDIAEFENMKDGSENFAK-DSFVRNKRNDVDNNTVKYSTDYRPPVM 196
           Q++ +D    + +++G  N +K D +  + RN   NN +++S+DY   ++
Sbjct: 49  QWLYEDFLSVKPLRNGGSNDSKQDEYKIHVRNRGKNNDMRFSSDYTTDIL 98


>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
           protein RME-8 protein.
          Length = 2279

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 148 QFVEDDIAEFENMKDGSENFAK-DSFVRNKRNDVDNNTVKYSTDYRPPVM 196
           Q++ +D    + +++G  N +K D +  + RN   NN +++S+DY   ++
Sbjct: 49  QWLYEDFLSVKPLRNGGSNDSKQDEYKIHVRNRGKNNDMRFSSDYTTDIL 98


>Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical
           protein F45H11.3 protein.
          Length = 738

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 144 NDKTQFVEDDIAEFENMKDGSENFAKDSFVRNKRNDVDNNTVKYSTDYRPPVMVMDKI 201
           +++   VED+  + E +    E + +D       +D ++      TDY  P++V DKI
Sbjct: 154 DEEVSHVEDENCDSEEISQDEEEY-EDEEGEEYDDDDESRIAPILTDYTAPMIVSDKI 210


>Z81492-10|CAB04029.2|  322|Caenorhabditis elegans Hypothetical
           protein E03H4.3 protein.
          Length = 322

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 126 FFWLWIDASKDFDVFHNINDKTQFVEDDIAEFENMKDGSE 165
           F++ ++  S  FD +   +D T F  D + E+ N  D S+
Sbjct: 146 FYYSYMHISNSFDWYLKADDDTYFAMDHLREYLNTLDPSK 185


>Z81133-4|CAI70414.1|  199|Caenorhabditis elegans Hypothetical
           protein T28B8.6 protein.
          Length = 199

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 158 ENMKDGSENFAKD--SFVRNKR---NDVDNNTVKYSTD--YRPPVMVMDKISNIAVNLNR 210
           EN++ GSE    +  S +  +R       N TV Y     Y+P V+V++K     + LN 
Sbjct: 46  ENLQQGSEEEKAELPSVLLQRRLLGKRYSNGTVIYDNKVKYKPIVVVINKRGRSTLYLNY 105

Query: 211 VYIRAAVRLMVGAL 224
           +Y+  A  +  G L
Sbjct: 106 LYVSIAFLVAAGLL 119


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.325    0.136    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,555,176
Number of Sequences: 27539
Number of extensions: 206106
Number of successful extensions: 804
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 796
Number of HSP's gapped (non-prelim): 16
length of query: 265
length of database: 12,573,161
effective HSP length: 80
effective length of query: 185
effective length of database: 10,370,041
effective search space: 1918457585
effective search space used: 1918457585
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)