Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000400-TA|BGIBMGA000400-PA|undefined
(265 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 31 0.13
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 31 0.13
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 27 2.1
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 27 3.7
SPAC23C11.17 |||mitochondrial inner membrane protein involved in... 26 4.9
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 26 6.5
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces... 26 6.5
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb... 26 6.5
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 25 8.5
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 31.5 bits (68), Expect = 0.13
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 51 LRTTPSHLHLAYTIANDMLPLEIRLEITARETLQALRRLAEISRLTRGIVVLICDIHYAK 110
++T S AYT+ +D+L L+I L A + + E+ R+T ++ L D+ K
Sbjct: 537 IKTIFSQNPSAYTLYDDILALDIELHKAAGD-FDYSQVFTELRRITEHMITLTIDVSLEK 595
Query: 111 LVIDEAKRL 119
I+ AK++
Sbjct: 596 DDIEYAKQI 604
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 31.5 bits (68), Expect = 0.13
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 156 EFENMKDGSENFAKDSFVRNKRNDVDNNTVKYSTD 190
E + D SENF SF ++R+ NN +K+S D
Sbjct: 576 EIPSYSDKSENFNTTSFTNHERSPNGNNNLKFSKD 610
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 150 VEDDIAEFENMKDGSENFAKDSFVRNKRNDVDNN 183
+E+ + EF NM+DG K++ +R K++ D N
Sbjct: 386 IEESLLEFRNMRDGKYQ-PKEAILRMKQDLSDGN 418
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 99 IVVLICDIHYAKLVI-DEAKRLNMLDGHFF 127
IV L CD Y+K +I ++AK + G++F
Sbjct: 306 IVYLFCDETYSKAIIRNKAKEYRAMSGNYF 335
>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
potassium ion transport|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 26.2 bits (55), Expect = 4.9
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 71 LEIRLEITARETLQALRRLAEISRLTRGIVVLICDIHYAKLVIDEAKRL--NMLDGHF 126
+ + E+T RE+ Q R L +I RL V ++ + +A+L++ A +L N+L F
Sbjct: 150 MAVGYELTRRESRQLTRTLKDIGRLVPFSVFVV--VPFAELLLPIAVKLFPNLLPSTF 205
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 6.5
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 98 GIVVLICDIHYAKLVIDEAKRLNMLDGHFFWLWIDASKDFDVFHNINDKTQFVEDDIAEF 157
G +V + D YA V+D+ + +LD + ++ + F+++ D+ F++ DI
Sbjct: 125 GAIVKVVDPLYAHEVVDDVNDIALLDSRWSMMFTKL-RVFEMYE--YDRICFLDSDILPI 181
Query: 158 ENM 160
+ M
Sbjct: 182 KKM 184
>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 99 IVVLICDIHYAKLVID-EAKRLNMLDGHFF 127
IV L CD Y+K +I +AK + G++F
Sbjct: 307 IVYLFCDETYSKAIIQGKAKEYRAITGNYF 336
>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 120 NMLDGHFFWLWIDASKD 136
NMLDG F W+ D KD
Sbjct: 116 NMLDGMFSWVLYDQDKD 132
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 25.4 bits (53), Expect = 8.5
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 105 DIHYAKLVIDEAKRLNMLDGHFFWLWIDASKDFDVFHNINDKTQFVEDDIAEFENMKDGS 164
D +YA L + + +D +D +D D F ++ T +++ ++ ++K +
Sbjct: 328 DAYYATLRAKQKEESEFMDSEN----VDDEEDDD-FLDVTTATS-LQNKSTDYGSVKRKT 381
Query: 165 ENFAKDSFVRNKR 177
EN DS ++NKR
Sbjct: 382 ENLNSDSDIQNKR 394
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.325 0.136 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,043,237
Number of Sequences: 5004
Number of extensions: 38976
Number of successful extensions: 175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 173
Number of HSP's gapped (non-prelim): 9
length of query: 265
length of database: 2,362,478
effective HSP length: 71
effective length of query: 194
effective length of database: 2,007,194
effective search space: 389395636
effective search space used: 389395636
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 53 (25.4 bits)
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