Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000400-TA|BGIBMGA000400-PA|undefined
(265 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0271 - 19612279-19612695,19612783-19613140,19613219-196134... 30 1.7
02_04_0258 + 21339682-21339806,21340635-21340730,21340905-213409... 30 2.2
04_04_0008 + 22125707-22125828,22127122-22127197,22127297-221273... 29 2.9
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 29 2.9
12_01_1067 - 11009508-11010071,11010122-11010679 29 5.1
02_01_0477 + 3431509-3431551,3432243-3432319,3432417-3432542,343... 29 5.1
02_01_0224 - 1461924-1462227,1462602-1462798,1463059-1463213,146... 28 6.7
02_04_0151 - 20240418-20240438,20240608-20240775,20240855-202409... 28 8.9
>05_04_0271 -
19612279-19612695,19612783-19613140,19613219-19613463,
19614535-19614585
Length = 356
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 182 NNTVKYSTDYRPPVMVMDKISNIAVNLNRVYIRAAVRLMVGALRRVLHACDAWSAQAQFF 241
N +K + PP + ++KI+N V L ++ I A +L + L + H W A A F
Sbjct: 220 NMVLKETLRLYPPAVFLNKIANRDVKLGKLDIPAGTQLQLPIL-DIHHDVSIWGADADEF 278
>02_04_0258 +
21339682-21339806,21340635-21340730,21340905-21340980,
21341085-21341143,21341280-21341380,21341447-21341773,
21341861-21342021,21342100-21342303,21342735-21342966,
21343629-21344239
Length = 663
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 112 VIDEAKRLNMLDGHFFWLWIDASKDFDVFHNINDKTQFVEDD-IAEFENMKDGSENFAKD 170
+++ AK + H+ + ID+ +F+NI + T + DD EN+ D + +A D
Sbjct: 329 LVEHAKTCVLSGKHYVYYAIDSRNVGAIFNNIYEFTGLIADDQFISAENLTDNQKIYA-D 387
Query: 171 SFVRNKRND 179
V+ D
Sbjct: 388 GLVKKAYED 396
>04_04_0008 +
22125707-22125828,22127122-22127197,22127297-22127367,
22127502-22127995,22128079-22128239,22128329-22128532,
22129292-22129526,22129996-22130591
Length = 652
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 112 VIDEAKRLNMLDGHFFWLWIDASKDFDVFHNINDKTQFVEDD-IAEFENMKDGSENFAKD 170
+++ AK + H+ + DA +F+NI + T + DD EN+ + FA D
Sbjct: 322 LVEHAKTCVLSGKHYIYYSSDARSVGAIFNNIYEFTGLIADDQYISAENLSENQRLFA-D 380
Query: 171 SFVRNKRNDVDNNTVKY 187
+ V+ +D N V+Y
Sbjct: 381 TLVKQAYDDW-INVVEY 396
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 143 INDKTQFVEDDIAEFENMKDGSE--NFAKDSFVRNK-----RNDVDNNTVKYSTDYRPPV 195
I DKT F+ + +E E + G E N K+ N +++ D+NT +++ + V
Sbjct: 508 IEDKTNFMPEKFSELEKVYTGCEKLNNKKEEQEENDKINTLKDEKDHNTFEHTDSIKGEV 567
Query: 196 MVMDKISNI 204
+ DK N+
Sbjct: 568 QLPDKDKNL 576
>12_01_1067 - 11009508-11010071,11010122-11010679
Length = 373
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/57 (29%), Positives = 21/57 (36%)
Query: 200 KISNIAVNLNRVYIRAAVRLMVGALRRVLHACDAWSAQAQFFSDATASCWDEPSDVA 256
+IS+ + + A RL R H D W FF T S WD VA
Sbjct: 122 RISSFQQMRDETILEAWERLQEYVTTRPHHGMDEWLILQNFFKGLTPSSWDHLDAVA 178
>02_01_0477 +
3431509-3431551,3432243-3432319,3432417-3432542,
3432638-3432715,3432797-3432952,3433044-3433140,
3433595-3433817,3440445-3440760,3440895-3441390,
3441485-3441651
Length = 592
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 133 ASKDFDVFHNINDKTQFVEDDIAEFENMKDGSENFAKDSFVRNKRNDVD 181
+ KD D +NIN+ Q V E EN SE + N ++D D
Sbjct: 145 SKKDIDELYNINNTHQVVNGSTPEVENNVSASE-LENNGTTSNNQDDED 192
>02_01_0224 -
1461924-1462227,1462602-1462798,1463059-1463213,
1464101-1464207,1464289-1464375,1465332-1465414,
1465959-1466027,1466332-1466658,1466744-1466957,
1467170-1467267,1467516-1467554,1467672-1468160
Length = 722
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/59 (27%), Positives = 32/59 (54%)
Query: 171 SFVRNKRNDVDNNTVKYSTDYRPPVMVMDKISNIAVNLNRVYIRAAVRLMVGALRRVLH 229
S VRN + V + +K S+D P +++ + N+A N + A+R++ L+ +L+
Sbjct: 374 SSVRNAISQVYDIIIKTSSDTIPIQTLLEALLNLAAVGNDAVVSRALRMLHSVLQHLLN 432
>02_04_0151 -
20240418-20240438,20240608-20240775,20240855-20240962,
20241519-20241605,20241687-20241728,20241875-20241937,
20242007-20242069,20242129-20242497,20242577-20242669,
20242746-20242838,20242942-20243145,20243305-20243549,
20243649-20243808
Length = 571
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 141 HNINDKTQFVEDDIAEFENMKDGSENFAKDSFVRNKR 177
HN ++Q +EDD E E D S N + +S +KR
Sbjct: 26 HNPLHESQALEDDEIELEQQDDDSLNMSGESAKEDKR 62
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.325 0.136 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,283,365
Number of Sequences: 37544
Number of extensions: 220242
Number of successful extensions: 718
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 710
Number of HSP's gapped (non-prelim): 16
length of query: 265
length of database: 14,793,348
effective HSP length: 81
effective length of query: 184
effective length of database: 11,752,284
effective search space: 2162420256
effective search space used: 2162420256
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)
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