GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000400-TA|BGIBMGA000400-PA|undefined
         (265 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42470.1 68415.m05254 meprin and TRAF homology domain-contain...    31   0.60 
At3g63370.1 68416.m07133 pentatricopeptide (PPR) repeat-containi...    28   7.4  
At3g27070.1 68416.m03386 mitochondrial import receptor subunit T...    28   7.4  
At3g05350.1 68416.m00583 aminopeptidase P, cytosolic, putative s...    28   7.4  
At4g38870.1 68417.m05504 F-box family protein contains Pfam prof...    27   9.8  
At4g29400.1 68417.m04199 expressed protein ; expression supporte...    27   9.8  
At3g27080.1 68416.m03387 mitochondrial import receptor subunit T...    27   9.8  
At1g79950.1 68414.m09344 helicase-related similar to BRCA1-bindi...    27   9.8  

>At2g42470.1 68415.m05254 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein contains Pfam
           profile PF00917: MATH domain
          Length = 898

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 15/65 (23%), Positives = 35/65 (53%)

Query: 146 KTQFVEDDIAEFENMKDGSENFAKDSFVRNKRNDVDNNTVKYSTDYRPPVMVMDKISNIA 205
           K +  E  +A   ++ DGS+    +  V+N + ++DN  +K ST     +++  ++ ++ 
Sbjct: 250 KKKLEEVSLARKNDISDGSQVEELEEHVKNLKLELDNEKIKSSTASERVLLLEKEVLDLK 309

Query: 206 VNLNR 210
           + L+R
Sbjct: 310 IELDR 314


>At3g63370.1 68416.m07133 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1017

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 81  ETLQALRRLAEISRLTRGIVVLICDIHYAKLVIDEAKRLNMLDGH 125
           E+ +   +L+E++R     V  + D  +    +DE +++ ML GH
Sbjct: 811 ESKEIYEKLSEVTRKLEREVGYVADTKFVLHNVDEGEKVQMLHGH 855


>At3g27070.1 68416.m03386 mitochondrial import receptor subunit
           TOM20-1 / translocase of outer membrane 20 kDa subunit 1
           (TOM20-1) identical to mitochondrial import receptor
           subunit TOM20-1 SP:P82872 from [Arabidopsis thaliana]
          Length = 188

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 114 DEAKRLNMLDGHFFWLWIDASKDFDVFHNINDKTQFVEDDIAEFEN 159
           +E  +LN  D      W +A  +   F N+ D  + ++D I++ E+
Sbjct: 15  EETYKLNPEDADNLMRWGEALLELSQFQNVIDSLKMIQDAISKLED 60


>At3g05350.1 68416.m00583 aminopeptidase P, cytosolic, putative
           similar to cytosolic aminopeptidase P from [Homo
           sapiens] GI:8489879, [Rattus norvegicus] GI:2760920;
           contains Pfam profile PF00557: metallopeptidase family
           M24
          Length = 569

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 12/66 (18%)

Query: 106 IHYAKLVIDEAKRLNMLDGHF--------FWLWIDASKDFDVFHNINDKTQFVEDDIAEF 157
           I +AK + ++A+   M + H         FW W++     +V  N N     V D + EF
Sbjct: 243 ISWAKAIKNDAELKGMKNSHLRDAAALAHFWAWLEE----EVHKNANLTEVDVADRLLEF 298

Query: 158 ENMKDG 163
            +M+DG
Sbjct: 299 RSMQDG 304


>At4g38870.1 68417.m05504 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 426

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/54 (27%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 63  TIANDMLPLEIRLEITARETLQALRRLAEISRLTRGIVVLICDIHYAKLVIDEA 116
           ++ +++LP+++ +EI  + +L+ L R   +S+L   I   I D ++ KL ++E+
Sbjct: 47  SVNSELLPVDLIMEILKKLSLKPLIRFLCVSKLWASI---IRDPYFMKLFLNES 97


>At4g29400.1 68417.m04199 expressed protein ; expression supported
           by MPSS
          Length = 288

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 143 INDKTQFVEDDIAEFENMKDGSENFAKDSFVRNKR 177
           +N   + +E+ + EFE + DG ++  +D F   KR
Sbjct: 46  VNGIGREMEEGVEEFEEVDDGDDDEVEDEFSAKKR 80


>At3g27080.1 68416.m03387 mitochondrial import receptor subunit
           TOM20-3 /  translocase of outer membrane 20 kDa subunit
           3 (TOM20-3) identical to mitochondrial import receptor
           subunit TOM20-3 SP:P82874 from [Arabidopsis thaliana]
          Length = 202

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 120 NMLDGHFFWLWIDASKDFDVFHNINDKTQFVEDDIAEFE 158
           N LD      W     +   FH+I+D  Q +++ I +FE
Sbjct: 27  NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFE 65


>At1g79950.1 68414.m09344 helicase-related similar to BRCA1-binding
           helicase-like protein BACH1 (GI:13661819) Homo
           sapiens].; contains similarity to helicase-like protein
           NHL GI:6969265 from (Homo sapiens)
          Length = 1040

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/52 (34%), Positives = 24/52 (46%)

Query: 61  AYTIANDMLPLEIRLEITARETLQALRRLAEISRLTRGIVVLICDIHYAKLV 112
           A+  AN   PLE       R  L  L+   +I R+ +G V+  C    AKLV
Sbjct: 825 AFPPANRASPLERDGNNVKRNGLTILKHTGKIPRIVKGDVMQGCSSRKAKLV 876


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.325    0.136    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,206,801
Number of Sequences: 28952
Number of extensions: 188350
Number of successful extensions: 701
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 695
Number of HSP's gapped (non-prelim): 8
length of query: 265
length of database: 12,070,560
effective HSP length: 80
effective length of query: 185
effective length of database: 9,754,400
effective search space: 1804564000
effective search space used: 1804564000
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 58 (27.5 bits)