Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000399-TA|BGIBMGA000399-PA|IPR005812|Ribosomal protein
L20, bacterial and organelle form, IPR005813|Ribosomal protein L20
         (159 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)                     41   5e-04
SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.19 
SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)               29   1.8  
SB_54318| Best HMM Match : TPR_2 (HMM E-Value=2.2e-23)                 27   5.5  

>SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)
          Length = 1047

 Score = 40.7 bits (91), Expect = 5e-04
 Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 16/138 (11%)

Query: 22  RRVFRLAAHYIGRRRNCYSIAVRNVHRALVYATKARKLKKEDMKSLWDVRITAACE-QHN 80
           +++F L+ + IG R++     ++  HR  +Y  K     KE +++     I AA E + N
Sbjct: 549 QKIFELSKNRIGHRKDLAMDDLK--HRVKMYEEKLNGYNKE-VEAFRKKEIMAAEEMKKN 605

Query: 81  IT-LFSLREGLDRA-NIMLDRKSLSDLASWEPKTFEALAAVAKYKLETDRFIDGQDKCHP 138
           +  L  L   LD A + ++D  +  +L  WEP  F  L ++  YK       +  +K   
Sbjct: 606 VEKLDELGTALDAARDELMDLNTEEELLQWEPTQFPILQSMMAYK-------EPYEKLWR 658

Query: 139 TGINLNLKDVMLEAWLNE 156
           T +N   K    EAWLNE
Sbjct: 659 TALNFQNKH---EAWLNE 673


>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2708

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 77  EQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAVAKYKLE 125
           EQH+ TLFS  E LD  N     K + D ++ E   ++ LA+ + ++ E
Sbjct: 621 EQHSETLFSFLEILDDFNSSTIAKPMDDSSAVEQMEYQPLASTSDFRSE 669


>SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)
          Length = 909

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 9/105 (8%)

Query: 60  KKEDMKSLWDVRITAACEQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAV 119
           +K+ MK++WD+      EQ+N  L  LR   +R    L+ ++ SD A ++ + FE    +
Sbjct: 398 EKDKMKAMWDLETEKVKEQNN-KLNCLRRDYERKFNSLE-EARSD-AMFQRQQFEKEKQL 454

Query: 120 AKYKLE------TDRFIDGQDKCHPTGINLNLKDVMLEAWLNEKK 158
           A  K++      T+  ++ +        +LN K  +LE  + EKK
Sbjct: 455 ALLKIQESSTRLTNSKLEREKALQIAEGDLNKKKDLLELEIAEKK 499


>SB_54318| Best HMM Match : TPR_2 (HMM E-Value=2.2e-23)
          Length = 640

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 48  RALVYATK--ARKLKKED--MKSLWDVRITAACEQHNITLFSLREGLDRANI 95
           R+L+Y T    R LK+    +K+L D     AC  H    +SLR GLD+ ++
Sbjct: 70  RSLMYDTTIPTRVLKELPWLLKNLGDSDRLVACLLHPAVFYSLRSGLDQYDL 121


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.135    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,228,902
Number of Sequences: 59808
Number of extensions: 181651
Number of successful extensions: 510
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 508
Number of HSP's gapped (non-prelim): 5
length of query: 159
length of database: 16,821,457
effective HSP length: 77
effective length of query: 82
effective length of database: 12,216,241
effective search space: 1001731762
effective search space used: 1001731762
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)