Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000399-TA|BGIBMGA000399-PA|IPR005812|Ribosomal protein
L20, bacterial and organelle form, IPR005813|Ribosomal protein L20
(159 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117203-7|CAB55109.1| 191|Caenorhabditis elegans Hypothetical ... 53 8e-08
Z92837-4|CAH10846.1| 193|Caenorhabditis elegans Hypothetical pr... 28 2.7
U58758-5|AAL11107.1| 693|Caenorhabditis elegans Hypothetical pr... 28 2.7
U58758-4|AAK68614.1| 914|Caenorhabditis elegans Hypothetical pr... 28 2.7
U58758-3|AAK68615.1| 905|Caenorhabditis elegans Hypothetical pr... 28 2.7
U58758-2|AAB93428.1| 424|Caenorhabditis elegans Hypothetical pr... 28 2.7
U41296-1|AAA93297.1| 579|Caenorhabditis elegans Steroid hormone... 27 4.7
AY204170-1|AAO39174.1| 579|Caenorhabditis elegans nuclear recep... 27 4.7
AL031630-16|CAA20996.1| 158|Caenorhabditis elegans Hypothetical... 27 4.7
AF067936-1|AAC19212.2| 579|Caenorhabditis elegans Nuclear hormo... 27 4.7
Z78411-1|CAB01644.2| 175|Caenorhabditis elegans Hypothetical pr... 27 8.3
>AL117203-7|CAB55109.1| 191|Caenorhabditis elegans Hypothetical
protein Y48C3A.10 protein.
Length = 191
Score = 53.2 bits (122), Expect = 8e-08
Identities = 30/107 (28%), Positives = 53/107 (49%)
Query: 15 PDEFWRKRRVFRLAAHYIGRRRNCYSIAVRNVHRALVYATKARKLKKEDMKSLWDVRITA 74
PD + ++ R+ R A R+ A R + Y R+ ++ K + R+
Sbjct: 26 PDVWMKRERLNRFTAWQYASERSTVKGAYRKEDKIFAYLNMQRQDERNLEKFHAEERVRT 85
Query: 75 ACEQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAVAK 121
A E+H++ + L +++I+LD LS LA +EP++F +L A AK
Sbjct: 86 ALEEHDMEYSKFKSILSQSHILLDNICLSQLAIYEPRSFRSLVAFAK 132
>Z92837-4|CAH10846.1| 193|Caenorhabditis elegans Hypothetical
protein R03E1.4 protein.
Length = 193
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 109 EPKTFEALAAVAKYKLETDRFIDGQDKCHPTGINLNLKDVMLEAWLN 155
EP + E +++ A+Y+LE + + + N K V+LEA++N
Sbjct: 88 EPPSSEIVSSQAQYRLENMKLLSNVPETFNVAGPSNSKMVLLEAYMN 134
>U58758-5|AAL11107.1| 693|Caenorhabditis elegans Hypothetical
protein ZK1127.9c protein.
Length = 693
Score = 28.3 bits (60), Expect = 2.7
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 59 LKKEDMKSLWDVRITAACEQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAA 118
L K +SL+D I + + F + + ++ M+ + + E +TF +A+
Sbjct: 531 LDKTRKESLFDDHIKSLERKRREAFFQVLDNHEKITPMMRWRDAKKIIQDEEETFVKIAS 590
Query: 119 VAKYKLETDRFIDGQDKCH 137
++ K+E D F D Q++ H
Sbjct: 591 NSERKVERD-FRDWQERRH 608
>U58758-4|AAK68614.1| 914|Caenorhabditis elegans Hypothetical
protein ZK1127.9a protein.
Length = 914
Score = 28.3 bits (60), Expect = 2.7
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 59 LKKEDMKSLWDVRITAACEQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAA 118
L K +SL+D I + + F + + ++ M+ + + E +TF +A+
Sbjct: 752 LDKTRKESLFDDHIKSLERKRREAFFQVLDNHEKITPMMRWRDAKKIIQDEEETFVKIAS 811
Query: 119 VAKYKLETDRFIDGQDKCH 137
++ K+E D F D Q++ H
Sbjct: 812 NSERKVERD-FRDWQERRH 829
>U58758-3|AAK68615.1| 905|Caenorhabditis elegans Hypothetical
protein ZK1127.9b protein.
Length = 905
Score = 28.3 bits (60), Expect = 2.7
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 59 LKKEDMKSLWDVRITAACEQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAA 118
L K +SL+D I + + F + + ++ M+ + + E +TF +A+
Sbjct: 743 LDKTRKESLFDDHIKSLERKRREAFFQVLDNHEKITPMMRWRDAKKIIQDEEETFVKIAS 802
Query: 119 VAKYKLETDRFIDGQDKCH 137
++ K+E D F D Q++ H
Sbjct: 803 NSERKVERD-FRDWQERRH 820
>U58758-2|AAB93428.1| 424|Caenorhabditis elegans Hypothetical
protein ZK1127.6 protein.
Length = 424
Score = 28.3 bits (60), Expect = 2.7
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 59 LKKEDMKSLWDVRITAACEQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAA 118
L K +SL+D I + + F + + ++ M+ + + E +TF +A+
Sbjct: 261 LDKTRKESLFDDHIKSLERKRREAFFQVLDNHEKITPMMRWRDAKKIIQDEEETFVKIAS 320
Query: 119 VAKYKLETDRFIDGQDKCH 137
++ K+E D F D Q++ H
Sbjct: 321 NSERKVERD-FRDWQERRH 338
>U41296-1|AAA93297.1| 579|Caenorhabditis elegans Steroid hormone
receptor-like proteinprotein.
Length = 579
Score = 27.5 bits (58), Expect = 4.7
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 103 SDLASWEPKTFEALAAVAKYKLETDRFIDGQDKC--HPTGINLNLKDVMLEAWLNEK 157
+D ASW P+ + A + K + F + +D C P+ NLN + + + L +
Sbjct: 362 ADYASWIPQDYGHPTAGHEGKSDMHNFFEARDFCVGRPSSCNLNERSMKTVSMLESR 418
>AY204170-1|AAO39174.1| 579|Caenorhabditis elegans nuclear receptor
NHR-47 protein.
Length = 579
Score = 27.5 bits (58), Expect = 4.7
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 103 SDLASWEPKTFEALAAVAKYKLETDRFIDGQDKC--HPTGINLNLKDVMLEAWLNEK 157
+D ASW P+ + A + K + F + +D C P+ NLN + + + L +
Sbjct: 362 ADYASWIPQDYGHPTAGHEGKSDMHNFFEARDFCVGRPSSCNLNERSMKTVSMLESR 418
>AL031630-16|CAA20996.1| 158|Caenorhabditis elegans Hypothetical
protein Y38H6C.18 protein.
Length = 158
Score = 27.5 bits (58), Expect = 4.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 29 AHYIGRRRNCYSIAVRNVHRALVYATKARKLKKEDMKS 66
AHY R R SI V + + + RK+ K+DM+S
Sbjct: 76 AHYRARARMQLSIEVSKKMQEITKEKRIRKMAKKDMRS 113
>AF067936-1|AAC19212.2| 579|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 47 protein.
Length = 579
Score = 27.5 bits (58), Expect = 4.7
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 103 SDLASWEPKTFEALAAVAKYKLETDRFIDGQDKC--HPTGINLNLKDVMLEAWLNEK 157
+D ASW P+ + A + K + F + +D C P+ NLN + + + L +
Sbjct: 362 ADYASWIPQDYGHPTAGHEGKSDMHNFFEARDFCVGRPSSCNLNERSMKTVSMLESR 418
>Z78411-1|CAB01644.2| 175|Caenorhabditis elegans Hypothetical
protein F02D8.1 protein.
Length = 175
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 48 RALVYATKARKLKKEDMKSLWDVRITAAC 76
R + AT R K+D+K +WD R + C
Sbjct: 86 RQSLAATLRRTSIKDDLKKIWDTRRVSLC 114
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.324 0.135 0.423
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,828,669
Number of Sequences: 27539
Number of extensions: 137020
Number of successful extensions: 400
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 396
Number of HSP's gapped (non-prelim): 11
length of query: 159
length of database: 12,573,161
effective HSP length: 76
effective length of query: 83
effective length of database: 10,480,197
effective search space: 869856351
effective search space used: 869856351
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)
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