Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000399-TA|BGIBMGA000399-PA|IPR005812|Ribosomal protein
L20, bacterial and organelle form, IPR005813|Ribosomal protein L20
         (159 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16740.1 68414.m02009 ribosomal protein L20 family protein si...    85   3e-17
At3g11760.1 68416.m01443 expressed protein                             32   0.21 
At1g58370.1 68414.m06640 glycosyl hydrolase family 10 protein / ...    28   3.4  
At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2) (T...    27   4.5  
At4g33990.1 68417.m04823 pentatricopeptide (PPR) repeat-containi...    27   4.5  
At5g19610.1 68418.m02334 sec7 domain-containing protein similar ...    27   5.9  
At1g06910.1 68414.m00734 myb family transcription factor contain...    27   7.8  

>At1g16740.1 68414.m02009 ribosomal protein L20 family protein
           similar to ribosomal protein L20 GI:3603025 from
           [Guillardia theta]
          Length = 126

 Score = 84.6 bits (200), Expect = 3e-17
 Identities = 41/101 (40%), Positives = 62/101 (61%)

Query: 21  KRRVFRLAAHYIGRRRNCYSIAVRNVHRALVYATKARKLKKEDMKSLWDVRITAACEQHN 80
           K+ +F+LA  + GR +NC  IA   V +AL Y+ + R+ KK +M+ LW  RI A   QH 
Sbjct: 3   KKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKREMRGLWIERINAGSRQHG 62

Query: 81  ITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAVAK 121
           +   +   GL + NI L+RK LS+L+  EP +F+AL  V++
Sbjct: 63  VNYGNFIHGLMKENIQLNRKVLSELSMHEPYSFKALVDVSR 103


>At3g11760.1 68416.m01443 expressed protein 
          Length = 702

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 82  TLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAVAKYK 123
           TL SLR  + R N   +    SD+ SWE + F++L ++  YK
Sbjct: 56  TLGSLRRSVKR-NFTKEAVGESDVVSWEDEEFQSLCSLTSYK 96


>At1g58370.1 68414.m06640 glycosyl hydrolase family 10 protein /
           carbohydrate-binding domain-containing protein similar
           to (1,4)-beta-xylan endohydrolase GI:5306060 from
           [Triticum aestivum] ; contains Pfam profiles PF00331:
           Glycosyl hydrolase family 10, PF02018: Carbohydrate
           binding domain
          Length = 917

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 77  EQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAVAK 121
           +Q+N  + S+  G DR N++++    S + SW P   EA    A+
Sbjct: 13  KQNNNNVASII-GSDRTNVIVNHDFSSGMHSWHPNCCEAFVVTAE 56


>At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2)
           (TITAN3) very strong similarity to SMC2-like condensin
           (TITAN3) [Arabidopsis thaliana] GI:14279543; contains
           Pfam profiles PF02483: SMC family C-terminal domain,
           PF02463: RecF/RecN/SMC N terminal domain
          Length = 1175

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/47 (29%), Positives = 26/47 (55%)

Query: 39  YSIAVRNVHRALVYATKARKLKKEDMKSLWDVRITAACEQHNITLFS 85
           YS  VRN  R+ V    A+ +K +D  S+  + +TA  + +++ + S
Sbjct: 508 YSDPVRNFDRSKVKGVVAKLIKVKDRSSMTALEVTAGGKLYDVVVDS 554


>At4g33990.1 68417.m04823 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 823

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 67  LWDVRITAACEQHNITLFSLREGLDRANIMLDRKSLSDLASW 108
           +WDV + A+     I L+S  + +  A I+ D   + D+ SW
Sbjct: 182 MWDVYVAASL----IHLYSRYKAVGNARILFDEMPVRDMGSW 219


>At5g19610.1 68418.m02334 sec7 domain-containing protein similar to
           SP|Q42510 Pattern formation protein EMB30 (GNOM)
           {Arabidopsis thaliana}; contains Pfam profile PF01369:
           Sec7 domain
          Length = 1375

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 8/52 (15%)

Query: 41  IAVRNVHRALVYAT--KARKL-----KKEDMKSLWDVRITAACEQ-HNITLF 84
           +AV N+ R+L+YA   K +K      ++E +K  WD+ IT A    H   +F
Sbjct: 925 VAVLNLGRSLIYAAAGKGQKFSTAIEEEETVKFCWDLIITIALSNVHRFNMF 976


>At1g06910.1 68414.m00734 myb family transcription factor contains
          Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 390

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 41 IAVRNVHRALVYATKARKLKKEDMKSLWDVRITAACEQ 78
          +AV    + L Y   A+K   E +K++W  RI   C++
Sbjct: 56 VAVECTVKCLAYEKDAKKAYTEAIKTIWLGRIMPLCDK 93


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.135    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,648,819
Number of Sequences: 28952
Number of extensions: 127974
Number of successful extensions: 357
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 352
Number of HSP's gapped (non-prelim): 7
length of query: 159
length of database: 12,070,560
effective HSP length: 76
effective length of query: 83
effective length of database: 9,870,208
effective search space: 819227264
effective search space used: 819227264
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)