GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000399-TA|BGIBMGA000399-PA|IPR005812|Ribosomal protein
L20, bacterial and organelle form, IPR005813|Ribosomal protein L20
         (159 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    22   2.8  
AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esteras...    21   3.8  
AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.      21   5.0  
AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.      21   5.0  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/10 (80%), Positives = 9/10 (90%)

Query: 150 LEAWLNEKKK 159
           L+AWLNE KK
Sbjct: 99  LKAWLNEHKK 108


>AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esterase
           protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 18/79 (22%), Positives = 30/79 (37%)

Query: 75  ACEQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAVAKYKLETDRFIDGQD 134
           A   H + L  L +GL    I     +L+  A   P T + LAA    +   ++ I  + 
Sbjct: 192 AAAVHYLVLSPLAKGLFHRAIAQSGCALNGFARGIPDTSKQLAAALGMQTTNEKEIFERL 251

Query: 135 KCHPTGINLNLKDVMLEAW 153
              P    L + + +   W
Sbjct: 252 SALPVDKLLQISEEVANIW 270


>AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.
          Length = 515

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 18/79 (22%), Positives = 30/79 (37%)

Query: 75  ACEQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAVAKYKLETDRFIDGQD 134
           A   H + L  L +GL    I     +L+  A   P T + LAA    +   ++ I  + 
Sbjct: 190 AAAVHYLVLSPLAKGLFHRAIAQSGCALNGFARGIPDTSKQLAAALGMQTTNEKEIFERL 249

Query: 135 KCHPTGINLNLKDVMLEAW 153
              P    L + + +   W
Sbjct: 250 SVLPVDKLLQISEEVANIW 268


>AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 18/79 (22%), Positives = 30/79 (37%)

Query: 75  ACEQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAVAKYKLETDRFIDGQD 134
           A   H + L  L +GL    I     +L+  A   P T + LAA    +   ++ I  + 
Sbjct: 192 AAAVHYLVLSPLAKGLFHRAIAQSGCALNGFARGIPDTSKQLAAALGMQTTNEKEIFERL 251

Query: 135 KCHPTGINLNLKDVMLEAW 153
              P    L + + +   W
Sbjct: 252 SILPVDEFLQISEEVANIW 270


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.135    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,978
Number of Sequences: 317
Number of extensions: 1285
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 159
length of database: 114,650
effective HSP length: 52
effective length of query: 107
effective length of database: 98,166
effective search space: 10503762
effective search space used: 10503762
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 40 (20.2 bits)