GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000399-TA|BGIBMGA000399-PA|IPR005812|Ribosomal protein
L20, bacterial and organelle form, IPR005813|Ribosomal protein L20
         (159 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ...    27   1.7  
SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subun...    27   1.7  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    26   3.1  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    25   5.3  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    24   9.3  

>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 77  EQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAVAKYKLETDR 128
           + H+I+  ++R   +R N  LD+ S+SDL S  P   E ++ V  Y+   ++
Sbjct: 387 QTHHISGSAVRMAEER-NTTLDKLSVSDLQSLHPLFDEDVSKVFNYEESVEK 437


>SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subunit
           Rpc31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 7/113 (6%)

Query: 28  AAHYIGRRRNCYSIAVRNVHRALVYATKARKLKKEDMKSLWDVRITAAC--EQHNITL-F 84
           +A YI  RRN  S+  RN    + Y+ + +  +K D  SL D+ +      E+   TL  
Sbjct: 65  SAFYI--RRNPISVVQRNEDGLVRYSDRNKPKRKNDNLSLSDLDLDPKFFPEELRKTLGA 122

Query: 85  SLREGLDRANIMLDRKSLSD--LASWEPKTFEALAAVAKYKLETDRFIDGQDK 135
           +   G  RA   LD K+  D  + + + K   + AA    + E D  ++ +D+
Sbjct: 123 ASATGRKRARRKLDMKTFIDFTIKAQDLKDESSEAAHPNIEEEPDEGLEEEDE 175


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 63  DMKSLWDVRITAACEQHNITLFSLREG------LDRANIMLDRKSLSDLASWEPKTFEA 115
           D K+L D++     E++ I  FSLR+G      +++ N  L  + ++   SWE   F++
Sbjct: 151 DSKTLTDLKKRKLVERNKIMYFSLRKGPNFSLQIEKLNTDLTAEMITS-RSWESAKFKS 208


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 12  CRGPDE--FWRKRRVFRLAAHYIGRRRNCYSIAVRN 45
           C GP +     K R+F  +AH I +  + Y   VRN
Sbjct: 163 CTGPSDSRIQEKIRLFIQSAHNIAKHPSLYDTEVRN 198


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 2/30 (6%)

Query: 86   LREGLDRANIMLDRK-SLSDLASWEPKTFE 114
            LR  LDRA  MLD+K S+SD+A    ++FE
Sbjct: 1196 LRLELDRAK-MLDKKLSMSDVAGKIAESFE 1224


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.135    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 696,493
Number of Sequences: 5004
Number of extensions: 24513
Number of successful extensions: 64
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 62
Number of HSP's gapped (non-prelim): 5
length of query: 159
length of database: 2,362,478
effective HSP length: 68
effective length of query: 91
effective length of database: 2,022,206
effective search space: 184020746
effective search space used: 184020746
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 50 (24.2 bits)