Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000399-TA|BGIBMGA000399-PA|IPR005812|Ribosomal protein
L20, bacterial and organelle form, IPR005813|Ribosomal protein L20
(159 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0612 + 30602862-30603410 59 2e-09
05_05_0149 - 22733703-22736216 30 0.76
04_03_0150 + 11877714-11878487,11880928-11881245 29 1.8
02_02_0631 - 12397517-12398452,12398693-12398819,12398971-123991... 29 2.3
08_02_1188 + 25053594-25054941,25055025-25055650 28 3.1
10_08_0554 - 18728485-18728676,18728778-18728859,18729083-187291... 27 5.4
08_01_0917 + 9033451-9036136,9036373-9036722 27 5.4
07_01_1023 + 8840754-8842988,8843189-8843362 27 5.4
10_08_0849 + 21040043-21040199,21040620-21040678,21040925-210424... 27 7.1
06_03_0179 - 17604561-17606435 27 7.1
12_01_0654 - 5542349-5542480,5542491-5542666,5542835-5542937,554... 27 9.4
09_04_0393 + 17255315-17256019,17256107-17257909 27 9.4
>01_06_0612 + 30602862-30603410
Length = 182
Score = 58.8 bits (136), Expect = 2e-09
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 21 KRRVFRLAAHYIGRRRNCYSIAVRNVHRALVYATKARKLKKEDMKSLWDVRITAACEQHN 80
K ++F+LA + GR +NC IA V +AL Y+ + R KK DM+SLW RI A H
Sbjct: 3 KGKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRHNKKRDMRSLWIERINAGTRLHG 62
Query: 81 ITLFSLREGLDRANIMLDRKSL 102
+ + + ++++ RK L
Sbjct: 63 VCIHCTQAVKKEISLVVARKDL 84
Score = 35.9 bits (79), Expect = 0.015
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 68 WDVRITAACEQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAVAK 121
W + + + + + GL + NI L+RK LS+L+ EP +F+AL V++
Sbjct: 110 WSLSSSFLAFDYQVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDVSR 163
>05_05_0149 - 22733703-22736216
Length = 837
Score = 30.3 bits (65), Expect = 0.76
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 121 KYKLETDRFIDGQDKCHPTGINLNLKDVMLEAWLNEKK 158
K K E D+ ID Q +C G+ ++ + LE+ + EKK
Sbjct: 640 KLKTEMDKLIDAQAQCGADGVPISYQVAKLESAVLEKK 677
>04_03_0150 + 11877714-11878487,11880928-11881245
Length = 363
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 19 WRKRRVFRLAAHYIGRRRNCYSIAVRNVHR--ALVYATKARKLKKEDMKSLWDVR 71
WR+R +RL AH +G R N V + A+ ++ + +E +++ W R
Sbjct: 219 WRRRASWRLGAHGVGLRVNAAGFVVEDASTVVAVDFSDPTARSSEEPVEAPWRSR 273
>02_02_0631 -
12397517-12398452,12398693-12398819,12398971-12399154,
12399303-12399395,12400029-12400077,12400565-12400624,
12400689-12400730,12400840-12400992,12401075-12401206,
12401313-12401408,12401936-12402079,12402234-12402308,
12403896-12404021
Length = 738
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 88 EGLDRANIMLDRKSLSDLASWEPKTFEALAAVAKYKLETDRFIDGQDKC 136
EGL++ ++ + R +WEP+ A ++ E D + D C
Sbjct: 478 EGLEKVDVWVHRPGSDVAVTWEPRKGRARCQDSRILRENDVYCDSPKSC 526
>08_02_1188 + 25053594-25054941,25055025-25055650
Length = 657
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 14 GPDEFWRKRRVFRLAAHYIGRRRN 37
G D WR+RR F A IGR R+
Sbjct: 393 GSDSGWRRRRAFETEAAAIGRARH 416
>10_08_0554 -
18728485-18728676,18728778-18728859,18729083-18729170,
18729286-18729327,18729747-18729858
Length = 171
Score = 27.5 bits (58), Expect = 5.4
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 69 DVRITAACEQHNITLFSLREGLDRANI-MLDRKSLSDLASWE-PKTFEALAAVAKYKLET 126
D +T + I+L E ++A K L+D+ASWE K E A + KY+
Sbjct: 52 DALLTTVATEKRISLIKAWEENEKAKADNKAAKKLADIASWENSKVAEIEAEIKKYQEYL 111
Query: 127 DR 128
+R
Sbjct: 112 ER 113
>08_01_0917 + 9033451-9036136,9036373-9036722
Length = 1011
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 110 PKTFEALAAVAKYKLETDRFIDGQD 134
PK+F L + K+ +ET+ FIDG+D
Sbjct: 166 PKSFSNLTTLVKFIIETN-FIDGKD 189
>07_01_1023 + 8840754-8842988,8843189-8843362
Length = 802
Score = 27.5 bits (58), Expect = 5.4
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 69 DVRITAACEQHNITLFSLREGL-DRANIMLDRKSLSDL-ASWE 109
++ ITA H+++ +S +EGL + AN ++ RK+L+ + WE
Sbjct: 302 NLMITAGVWGHDVSNYSAKEGLCEEANDIIPRKNLTIVDGVWE 344
>10_08_0849 +
21040043-21040199,21040620-21040678,21040925-21042494,
21042583-21042710,21042793-21043033,21043160-21043710
Length = 901
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 125 ETDRFIDGQDKC-HPTGINLNLK-DVMLEAWLNEKKK 159
E D+++DG KC P+ + +K D+ ++AW++ + K
Sbjct: 839 EVDKYVDGYLKCSFPSTLEQIIKRDLEVQAWMDIRSK 875
>06_03_0179 - 17604561-17606435
Length = 624
Score = 27.1 bits (57), Expect = 7.1
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 72 ITAACEQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAVAKYK 123
+ AA H + + + L+ A +LD+ +S EPKT E LAAV K
Sbjct: 283 LDAALLSHGLAVPAQLNPLEFALEVLDQMPHPSASSPEPKTTEELAAVTSSK 334
>12_01_0654 -
5542349-5542480,5542491-5542666,5542835-5542937,
5542971-5543084,5543104-5543163,5543258-5544316
Length = 547
Score = 26.6 bits (56), Expect = 9.4
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 85 SLREGLDRANIMLDRK--SLSDLASWEPKTFEALAAVAKYKLETDRFIDG 132
SLR G+ I+L + S++DLAS PK + + K ET R I G
Sbjct: 328 SLRTGVYGRKILLTTRMQSVADLASAIPKNLKNYKKLEKKLQETKRVIAG 377
>09_04_0393 + 17255315-17256019,17256107-17257909
Length = 835
Score = 26.6 bits (56), Expect = 9.4
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 61 KEDMKSLWDVRIT----AACEQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEAL 116
K+D+KSLW+ T E+ NI +E L + + ++ LS +A +E E
Sbjct: 513 KDDVKSLWNAAATLQANVEMEKTNIASLRQKENLAFESALALQEELSKIA-FELSMVEER 571
Query: 117 AAVAKYKLE 125
AK LE
Sbjct: 572 TKAAKMPLE 580
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.324 0.135 0.423
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,500,068
Number of Sequences: 37544
Number of extensions: 159346
Number of successful extensions: 456
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 449
Number of HSP's gapped (non-prelim): 13
length of query: 159
length of database: 14,793,348
effective HSP length: 76
effective length of query: 83
effective length of database: 11,940,004
effective search space: 991020332
effective search space used: 991020332
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)
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