GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000399-TA|BGIBMGA000399-PA|IPR005812|Ribosomal protein
L20, bacterial and organelle form, IPR005813|Ribosomal protein L20
         (159 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   4.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   4.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.9  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 77  EQHNITLFSLREGLDRANIMLDRKSL 102
           E HN + FS+   L+R N++    SL
Sbjct: 469 ELHNSSPFSIYSFLERLNLIFMSSSL 494


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 77  EQHNITLFSLREGLDRANIMLDRKSL 102
           E HN + FS+   L+R N++    SL
Sbjct: 507 ELHNSSPFSIYSFLERLNLIFMSSSL 532


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 94  NIMLDRKSLSDLASWEP 110
           +I +D  S++ +A WEP
Sbjct: 560 SISVDSGSINTVAEWEP 576


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.135    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,369
Number of Sequences: 429
Number of extensions: 1533
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 159
length of database: 140,377
effective HSP length: 53
effective length of query: 106
effective length of database: 117,640
effective search space: 12469840
effective search space used: 12469840
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 41 (20.6 bits)