Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000398-TA|BGIBMGA000398-PA|IPR004165|Coenzyme A
transferase, IPR012792|3-oxoacid CoA-transferase, subunit A,
IPR012791|3-oxoacid CoA-transferase, subunit B, IPR004163|Coenzyme A
transferase binding site, IPR004164|Coenzyme A transferase active site
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    32   0.22 
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    30   0.67 
SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor |Schizo...    29   1.6  
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    29   2.1  
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    28   2.7  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    28   3.6  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    28   3.6  
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa...    27   4.7  

>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 263 IIKEDNFEKRIERKT--TRKPNQTSKSTDSLREKIIRRAALEFKDGM 307
           I +ED  EK +E+KT  T++  Q S + D LREK  RR+ +   D +
Sbjct: 134 IPEEDEMEK-LEQKTLDTKRQMQISDALDELREKSARRSRVNIDDAI 179


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 30.3 bits (65), Expect = 0.67
 Identities = 12/33 (36%), Positives = 21/33 (63%)

Query: 191 NNYVMEEAITGDFAFVKAWKADKHGNLIFRKSA 223
           N ++M + IT  +AF +  K ++HG++  RK A
Sbjct: 162 NQFLMNKPITVSYAFKREGKGERHGDIAERKLA 194


>SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 512

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 254 HVPSIYVHRIIKEDNFEKRIERKTTRKPNQTSKSTDSLREKIIRRAALEFK 304
           H+ S +V  + KED FEK     T     + S++++SL +K  R + L FK
Sbjct: 453 HLASTFVQDVGKEDVFEK--TSITISNEERKSRNSESLPKKKKRLSMLSFK 501


>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 312 GIGMPMLASNYIPENVKVLLQSENGILGLGPFPTEEEVD---ADLINAGKE 359
           G+G      N +  N + L+Q ++GI+ L  FP  E++    A +I  GKE
Sbjct: 8   GLGAVTPLGNGVKTNWRNLIQGKSGIVSLKGFPEYEQIPSKVAGVIPRGKE 58


>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 154 PTGFGTLIQEGGSPIKYTKDGKI 176
           PTG   ++ +G   IK TKDGK+
Sbjct: 38  PTGTTKMLVDGAGAIKLTKDGKV 60


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 4/95 (4%)

Query: 270 EKRIERKTTRKPNQTSKSTDSLREKIIRRAA-LEFKDGMHANLGIGMPMLASNYIPEN-V 327
           EK+  +K  ++ +   +    L E+I  R   +  K+     L      L S    EN +
Sbjct: 40  EKKRLQKVRKEISSVKEKIRRLDERIDSRLTKISVKENFRKQLSKFRDTLQSLQSDENDI 99

Query: 328 KVLLQSENGIL--GLGPFPTEEEVDADLINAGKET 360
           K  L +E+     G+G F TEE    +LI  GK T
Sbjct: 100 KRRLNNEDSANAPGIGAFSTEELERQELIRTGKVT 134


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 9/25 (36%), Positives = 19/25 (76%)

Query: 91  EDFGLGILLKSKQIKRMISSYVGEN 115
           ++ G+G++L  +QI++++  YV EN
Sbjct: 114 KETGVGVVLTPEQIEQLVGDYVAEN 138


>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
           Vps32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 101 SKQIKRMISSYVGENAEFERQFLSGELE 128
           S++I  MIS+ VG NAE +   L+ EL+
Sbjct: 137 SEEISTMISTPVGLNAEIDEDELANELD 164


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.135    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,176,709
Number of Sequences: 5004
Number of extensions: 88835
Number of successful extensions: 226
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 8
length of query: 516
length of database: 2,362,478
effective HSP length: 76
effective length of query: 440
effective length of database: 1,982,174
effective search space: 872156560
effective search space used: 872156560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)