Silkworm BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000398-TA|BGIBMGA000398-PA|IPR004165|Coenzyme A
transferase, IPR012792|3-oxoacid CoA-transferase, subunit A,
IPR012791|3-oxoacid CoA-transferase, subunit B, IPR004163|Coenzyme A
transferase binding site, IPR004164|Coenzyme A transferase active site
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0238 - 1976645-1977561,1977649-1977909,1978243-1978275,198...    31   2.2  
04_04_0930 - 29480700-29480853,29481007-29483036                       30   3.9  
12_01_0135 + 1042889-1044255,1045368-1045809                           29   8.9  
11_01_0133 + 1121392-1122731,1123417-1123858                           29   8.9  
03_02_0787 + 11180794-11180958,11181051-11181230,11181396-111816...    29   8.9  

>01_01_0238 -
           1976645-1977561,1977649-1977909,1978243-1978275,
           1980556-1981345
          Length = 666

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 13/136 (9%)

Query: 39  YASAQEVVQDVSDGSKLLVGGFGLCGIPENLIKALNIKKVSALTVVSNN-AGVEDF--GL 95
           Y    E     SD  +L VGGFG   + + +++  N   V+   +  N+   VE F   +
Sbjct: 335 YEELDEATDGFSDARELGVGGFGT--VYKGILR--NGDTVAVKRLYKNSYKSVEQFQNEV 390

Query: 96  GILLKSKQIKRMISSYVGENAEFERQFLSGELEVELTPQGTLAERIRAGGAGIPAFFT-P 154
           GIL + +    +++ +   +    R  L   L  E  P GTLA+ +  G A   +    P
Sbjct: 391 GILSRLRH-PNLVTLFGCTSQTNSRDLL---LVYEFVPNGTLADHLHGGAAARSSSLDWP 446

Query: 155 TGFGTLIQEGGSPIKY 170
           T  G  + E  S ++Y
Sbjct: 447 TRLGIAV-ETASALEY 461


>04_04_0930 - 29480700-29480853,29481007-29483036
          Length = 727

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 21/172 (12%)

Query: 50  SDGSKLLVGGFGLC--GIPENLIKALNIKKVSALTVVSNNAGVEDFGLGILLKSKQIKRM 107
           S   KL  GGFG    G   ++   + +K+V+A    S+N G ++F   +   SK   R 
Sbjct: 335 SSSRKLGRGGFGTVYHGYLSSMNMEVAVKRVAANNKSSSNRGEQEFVAEVNTISKLSHRN 394

Query: 108 ISSYVGENAEFERQFLSGELEV--ELTPQGTLAERIRAGGAGIPAFFTPTGFGTLIQEGG 165
           +   +G   E       GEL +  E  P G+L +++  GGA  PA  T      +I    
Sbjct: 395 LVKLIGWCHE------GGELLLVYEYFPMGSL-DKLLYGGAR-PAELTWERRYKIICGVA 446

Query: 166 SPIKYTKDGKIDIPSSARFV-QQFNGNNYVMEE---AITGDFAFVKAWKADK 213
           S ++Y   G     SS+R + +    +N +++E   A  GDF   +    D+
Sbjct: 447 SALEYLHHG-----SSSRILHRDVKASNVMLDEEYSARLGDFGLARVIHLDE 493


>12_01_0135 + 1042889-1044255,1045368-1045809
          Length = 602

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 471 EKGLILTELAEGVKVEDIVASTGCEFNVAQKIKTMGDVTRP 511
           E G   T   +G+ + DI+AS+G   +VAQ I  + ++ RP
Sbjct: 74  EGGPPSTAWVDGI-IRDIIASSGAAVSVAQLIHNVREIIRP 113


>11_01_0133 + 1121392-1122731,1123417-1123858
          Length = 593

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 471 EKGLILTELAEGVKVEDIVASTGCEFNVAQKIKTMGDVTRP 511
           E G   T   +G+ + DI+AS+G   +VAQ I  + ++ RP
Sbjct: 72  EGGPPSTAWVDGI-IRDIIASSGAAVSVAQLIHNVREIIRP 111


>03_02_0787 +
           11180794-11180958,11181051-11181230,11181396-11181611,
           11181693-11181875,11182013-11182234,11182434-11182550,
           11182682-11182825,11183198-11183299,11183762-11183830,
           11184283-11184516
          Length = 543

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 64  GIPENLIKALNIKKVSALTVVSNNAGVEDFGLGILLKSKQIKRMISSYVGENAEF 118
           GIPE   K   + +  A+T  S    +ED  L    +S  +K    SY+GE AEF
Sbjct: 472 GIPEPYEKLKEMTRGQAVTKDSIRQFIEDLDLPEAARSSLLKLTPHSYIGE-AEF 525


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.135    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,267,522
Number of Sequences: 37544
Number of extensions: 600278
Number of successful extensions: 1225
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1224
Number of HSP's gapped (non-prelim): 5
length of query: 516
length of database: 14,793,348
effective HSP length: 85
effective length of query: 431
effective length of database: 11,602,108
effective search space: 5000508548
effective search space used: 5000508548
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)