Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000398-TA|BGIBMGA000398-PA|IPR004165|Coenzyme A
transferase, IPR012792|3-oxoacid CoA-transferase, subunit A,
IPR012791|3-oxoacid CoA-transferase, subunit B, IPR004163|Coenzyme A
transferase binding site, IPR004164|Coenzyme A transferase active site
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32524| Best HMM Match : CoA_trans (HMM E-Value=1.26117e-44)        190   2e-48
SB_32980| Best HMM Match : DEAD (HMM E-Value=0)                        31   1.7  
SB_34041| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.8  

>SB_32524| Best HMM Match : CoA_trans (HMM E-Value=1.26117e-44)
          Length = 318

 Score =  190 bits (463), Expect = 2e-48
 Identities = 87/117 (74%), Positives = 102/117 (87%), Gaps = 1/117 (0%)

Query: 380 RGGHIDLTILGAMQVSQYGDLANWMIPGKMVKGMGGAMDLVSAPRTKVVVTMEHTAKNGS 439
           R GHID+TILGAMQVSQ+GD+AN+MIPGKMVKGMGGAMDLVS+P ++V+VTMEH AK   
Sbjct: 148 RSGHIDITILGAMQVSQFGDIANYMIPGKMVKGMGGAMDLVSSP-SRVIVTMEHVAKGND 206

Query: 440 HKILPECTLPLTGKNCVDMIITEKCVFEVDKEKGLILTELAEGVKVEDIVASTGCEF 496
           HKIL ECTLPLTGKNCV+MIITEKCVF+VD E+GL LTEL  GV ++++  STGC F
Sbjct: 207 HKILEECTLPLTGKNCVNMIITEKCVFDVDPEEGLTLTELWPGVSIQEVQTSTGCGF 263



 Score = 73.7 bits (173), Expect = 3e-13
 Identities = 34/54 (62%), Positives = 39/54 (72%)

Query: 36 SKIYASAQEVVQDVSDGSKLLVGGFGLCGIPENLIKALNIKKVSALTVVSNNAG 89
          +K Y +  E ++D+ D  KLLVGGFGLCGIPENLI ALN   V  LT VSNNAG
Sbjct: 38 AKFYNTPDEAIKDIPDNCKLLVGGFGLCGIPENLIIALNASGVKGLTCVSNNAG 91



 Score = 32.3 bits (70), Expect = 0.97
 Identities = 15/20 (75%), Positives = 17/20 (85%)

Query: 221 KSARNFNPAMCRAARVTIAE 240
           KSARNFN  M +AA+VTIAE
Sbjct: 92  KSARNFNAPMGKAAKVTIAE 111


>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 985

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 451 TGKNCVDMIIT-EKCVFEVDKEKGLILTELAE-GVKVEDIVASTGCEFN 497
           TGK CV  +I  E  + E +  + +ILT   E  V+V+D++ + GC ++
Sbjct: 61  TGKTCVFSVIALENVITESNCIQIIILTPTREIAVQVKDVICAIGCHYD 109


>SB_34041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 951

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 16/38 (42%), Positives = 19/38 (50%)

Query: 50  SDGSKLLVGGFGLCGIPENLIKALNIKKVSALTVVSNN 87
           S   K  +G  GL GIPE    A N KK   L ++ NN
Sbjct: 608 SKNGKPAMGDQGLSGIPEVETSACNDKKTPILGILKNN 645


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.135    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,686,473
Number of Sequences: 59808
Number of extensions: 630476
Number of successful extensions: 1426
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1421
Number of HSP's gapped (non-prelim): 5
length of query: 516
length of database: 16,821,457
effective HSP length: 85
effective length of query: 431
effective length of database: 11,737,777
effective search space: 5058981887
effective search space used: 5058981887
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)