Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000398-TA|BGIBMGA000398-PA|IPR004165|Coenzyme A
transferase, IPR012792|3-oxoacid CoA-transferase, subunit A,
IPR012791|3-oxoacid CoA-transferase, subunit B, IPR004163|Coenzyme A
transferase binding site, IPR004164|Coenzyme A transferase active site
         (516 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           26   0.65 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   6.1  

>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 26.2 bits (55), Expect = 0.65
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 3/28 (10%)

Query: 466 FEVDKEKGLILTELAEGVKVEDIVASTG 493
           FEV KE+   LT+L +G + +DI+ S+G
Sbjct: 36  FEVSKEE---LTKLVQGFEEQDILTSSG 60


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 6.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 146 AGIPAFFTPTGFGTLIQEGG 165
           AGIP FF     G ++  GG
Sbjct: 30  AGIPMFFMELALGQMLTVGG 49


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.135    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,529
Number of Sequences: 429
Number of extensions: 5572
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 2
length of query: 516
length of database: 140,377
effective HSP length: 61
effective length of query: 455
effective length of database: 114,208
effective search space: 51964640
effective search space used: 51964640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)