Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000398-TA|BGIBMGA000398-PA|IPR004165|Coenzyme A
transferase, IPR012792|3-oxoacid CoA-transferase, subunit A,
IPR012791|3-oxoacid CoA-transferase, subunit B, IPR004163|Coenzyme A
transferase binding site, IPR004164|Coenzyme A transferase active site
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01400.1 68417.m00180 pentatricopeptide (PPR) repeat-containi...    31   2.4  
At2g26550.1 68415.m03185 heme oxygenase 2 (HO2) similar to heme ...    30   3.2  
At5g33406.1 68418.m03990 hAT dimerisation domain-containing prot...    29   5.6  
At1g01220.1 68414.m00036 GHMP kinase-related contains similarity...    29   7.4  

>At4g01400.1 68417.m00180 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1117

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 28/127 (22%), Positives = 61/127 (48%), Gaps = 5/127 (3%)

Query: 18  NSIGKIKSCATYATIIRKSKIYASAQEVVQDVSDGSKLLVGGFGLCGIPENLIKALNIKK 77
           ++I  + +  +YA  +  +  + + Q+ +++ + G++L +GG G+      +  ALN   
Sbjct: 830 SNISSVIAVLSYAGSLLGNDYHEALQQKIREPNLGARLFLGGIGVENTGTEIATALNNMD 889

Query: 78  VSALTVVSNNAGVEDFGLGILLKSKQIKRMIS--SYVGENAEFERQFLSGELEVELTPQG 135
           VS   ++     +E+    +       +R+ S  S +GE +   +Q L+  +E +L    
Sbjct: 890 VSCEYILKLKHEIEEQCTEVFPAPADRERIKSCLSELGELSSTFKQLLNSGME-QLV--A 946

Query: 136 TLAERIR 142
           T+  RIR
Sbjct: 947 TVTPRIR 953


>At2g26550.1 68415.m03185 heme oxygenase 2 (HO2) similar to heme
           oxygenase 2 [Arabidopsis thaliana]
           gi|4530595|gb|AAD22109
          Length = 354

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 384 IDLTILGAMQVSQYGDLANWMIPGKMVKGM--------GGAMDLVSAPRTKVVVTMEHTA 435
           ID+ I+ + ++   G L  W +  K+++G         G A DL+   R K+ V  EH +
Sbjct: 268 IDIDIVDSGELGLSGVLRLWWVSEKLLEGKELEFNRWEGDAQDLLKGVREKLNVLGEHWS 327

Query: 436 KNGSHKILPE 445
           ++  +K L E
Sbjct: 328 RDEKNKCLKE 337


>At5g33406.1 68418.m03990 hAT dimerisation domain-containing protein
           low similarity to transposase [Fusarium oxysporum f. sp.
           lycopersici] GI:3126916; contains Pfam profile PF05699:
           hAT family dimerisation domain
          Length = 485

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 112 VGENAEFERQFLSGELEVELTPQGTLAERIRAGGAGIPAFFTPTGFGTLIQEGGSPIKYT 171
           V E+ E E  FL  E E  L  +        AG   IP+   P GFG       SP   T
Sbjct: 387 VDEDEEMEDDFLGAEYEDTLLDKDDYEFDDSAGYNQIPSIPAPLGFGPPPSSTMSPYGTT 446

Query: 172 KDGK-IDIPSSA 182
            D   + +P++A
Sbjct: 447 MDAMYMHLPNAA 458


>At1g01220.1 68414.m00036 GHMP kinase-related contains similarity to
           L-fucose kinase [Homo sapiens] gi|21212956|emb|CAD29647
          Length = 1055

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 16  LVNSIGKIKSCATYATIIRKSKIYASAQEVVQDVSDGSKLLVGGFGLCGIPENLIKALNI 75
           LVNS+G+ K  + Y T   +   + ++ EV+  +S  +  +VG   LC IP   +  +  
Sbjct: 334 LVNSLGRQKMYS-YCTYDLQFLHFGTSSEVLDHLSGDASGIVGRRHLCSIPATTVSDIAA 392

Query: 76  KKV 78
             V
Sbjct: 393 SSV 395


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.135    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,557,548
Number of Sequences: 28952
Number of extensions: 486854
Number of successful extensions: 1123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1122
Number of HSP's gapped (non-prelim): 4
length of query: 516
length of database: 12,070,560
effective HSP length: 84
effective length of query: 432
effective length of database: 9,638,592
effective search space: 4163871744
effective search space used: 4163871744
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)