GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000398-TA|BGIBMGA000398-PA|IPR004165|Coenzyme A
transferase, IPR012792|3-oxoacid CoA-transferase, subunit A,
IPR012791|3-oxoacid CoA-transferase, subunit B, IPR004163|Coenzyme A
transferase binding site, IPR004164|Coenzyme A transferase active site
         (516 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-9|CAD27760.1|  348|Anopheles gambiae putative translati...    28   0.69 
AJ439353-5|CAD27927.1|  459|Anopheles gambiae putative G-protein...    25   6.4  
CR954257-5|CAJ14156.1|  227|Anopheles gambiae predicted protein ...    24   8.5  

>AJ439060-9|CAD27760.1|  348|Anopheles gambiae putative translation
           initiation factor protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 0.69
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 377 AMIRGGHIDLTILGAMQVSQYGDLANWMIPGKM--VKGMGGAMDLVSAPRTKVVVTMEHT 434
           A++    ID  I+GA +V+  GD AN +   +M  V    G    V+AP T + V +E  
Sbjct: 226 ALLNSRKIDAIIVGADRVAANGDTANKIGTYQMAVVAKHHGVPFYVAAPFTSIDVAIE-- 283

Query: 435 AKNGSH 440
             +GSH
Sbjct: 284 --DGSH 287


>AJ439353-5|CAD27927.1|  459|Anopheles gambiae putative G-protein
           coupled receptor protein.
          Length = 459

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 9   LDANYSKLVNSIGKIKSCATYATIIRKSKIYA 40
           +D  Y+ L  ++GK+ SC+ +   I   K Y+
Sbjct: 219 IDVAYAYLFFAVGKLPSCSCWVVRIPIGKTYS 250


>CR954257-5|CAJ14156.1|  227|Anopheles gambiae predicted protein
           protein.
          Length = 227

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 14/38 (36%), Positives = 17/38 (44%)

Query: 329 VLLQSENGILGLGPFPTEEEVDADLINAGKETVTILPG 366
           VLL    G   L  FP +  V  +L NA   T   +PG
Sbjct: 26  VLLHPSVGAQELFAFPADVVVSPNLENARNRTPVYIPG 63


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.135    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 487,879
Number of Sequences: 2123
Number of extensions: 20061
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 3
length of query: 516
length of database: 516,269
effective HSP length: 67
effective length of query: 449
effective length of database: 374,028
effective search space: 167938572
effective search space used: 167938572
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)