GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000398-TA|BGIBMGA000398-PA|IPR004165|Coenzyme A
transferase, IPR012792|3-oxoacid CoA-transferase, subunit A,
IPR012791|3-oxoacid CoA-transferase, subunit B, IPR004163|Coenzyme A
transferase binding site, IPR004164|Coenzyme A transferase active site
         (516 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48178-4|CAA88202.1|  521|Caenorhabditis elegans Hypothetical pr...   579   e-165
Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical pr...    30   4.5  
Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical p...    30   4.5  
L10986-10|AAL08032.1|  111|Caenorhabditis elegans Hypothetical p...    29   5.9  

>Z48178-4|CAA88202.1|  521|Caenorhabditis elegans Hypothetical
           protein C05C10.3 protein.
          Length = 521

 Score =  579 bits (1430), Expect = e-165
 Identities = 281/479 (58%), Positives = 352/479 (73%), Gaps = 7/479 (1%)

Query: 35  KSKIYASAQEVVQDVSDGSKLLVGGFGLCGIPENLIKALNIKKVSALTVVSNNAGVEDFG 94
           K+K++ SA+E V+D+ D +KLLVGGFGLCGIPENLI+A+       LT VSNNAGV+++G
Sbjct: 36  KAKVFNSAEEAVKDIPDNAKLLVGGFGLCGIPENLIQAITKTGQKGLTCVSNNAGVDNWG 95

Query: 95  LGILLKSKQIKRMISSYVGENAEFERQFLSGELEVELTPQGTLAERIRAGGAGIPAFFTP 154
           LG+LL+++QIK+MISSYVGEN EF RQ+LSGELE+E TPQGTLAERIRA GAG+PAF+TP
Sbjct: 96  LGLLLQTRQIKKMISSYVGENGEFARQYLSGELELEFTPQGTLAERIRAAGAGVPAFYTP 155

Query: 155 TGFGTLIQEGGSPIKYTKD--GKIDIPSSARFVQQFNGNNYVMEEAITGDFAFVKAWKAD 212
           TG+GT IQEGG+PIKY+K   GKI++ S A+  +QFNG NYVMEEAI GDFA +KAW+AD
Sbjct: 156 TGYGTQIQEGGAPIKYSKTEKGKIEVASKAKETRQFNGINYVMEEAIWGDFALIKAWRAD 215

Query: 213 KHGNLIFRKSARNFNPAMCRAARVTIAEVXXXXXXXXXX--FVHVPSIYVHRIIKEDNFE 270
             GN+ FR +A NFN  MC+A++ TI EV             VH+PSIY HR++   N++
Sbjct: 216 TLGNIQFRHAAGNFNNPMCKASKCTIVEVEEIVEPGVIAPNDVHIPSIYCHRLVLGKNYK 275

Query: 271 KRIERKTTRKPNQTSKSTDSL---REKIIRRAALEFKDGMHANLGIGMPMLASNYIPENV 327
           K IER           ST +    RE I  RAALEF DGM+ANLGIG+P LA NYIP   
Sbjct: 276 KPIERPMFAHEGPIKPSTSAAGKSREIIAARAALEFTDGMYANLGIGIPTLAPNYIPNGF 335

Query: 328 KVLLQSENGILGLGPFPTEEEVDADLINAGKETVTILPGAXXXXXXXXXAMIRGGHIDLT 387
            V LQSENGI+G+GP+P +   DADLINAGKE +T+L GA         AMIRG H+D+T
Sbjct: 336 TVHLQSENGIIGVGPYPRKGTEDADLINAGKEPITLLKGASIVGSDESFAMIRGSHMDIT 395

Query: 388 ILGAMQVSQYGDLANWMIPGKMVKGMGGAMDLVSAPRTKVVVTMEHTAKNGSHKILPECT 447
           +LGA+Q SQ+GDLANWMIPGK+VKGMGGAMDLVSAP  +V+V MEH +KNG  KIL  C 
Sbjct: 396 VLGALQCSQFGDLANWMIPGKLVKGMGGAMDLVSAPGARVIVVMEHVSKNGEPKILEHCE 455

Query: 448 LPLTGKNCVDMIITEKCVFEVDKEKGLILTELAEGVKVEDIVASTGCEFNVAQKIKTMG 506
           LPLTGK  +  IIT+  VF+VD + GL L E+ + + V+DI   T C+F +++ +K MG
Sbjct: 456 LPLTGKGVISRIITDMAVFDVDTKNGLTLIEVRKDLTVDDIKKLTACKFEISENLKPMG 514


>Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical
           protein C38D9.5 protein.
          Length = 1213

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 282 NQTSKSTDSLREKIIRRAALEFKDGMHANLGIGMPMLASNYIPENVKVLLQSENGILGLG 341
           N   K +D L ++++   A +  + ++ NL  G+P + S++I EN   + +  + +  L 
Sbjct: 602 NALRKLSDVLAKQVVVSTAADSPNEVN-NLIAGLPEMQSSWIQENRDGMKKLLDDLTKLD 660

Query: 342 PFPTEEEVDADLINAG 357
            +  +   D DLI  G
Sbjct: 661 KYAKDHSSDKDLIKYG 676


>Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical
           protein C38D9.5 protein.
          Length = 1213

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 282 NQTSKSTDSLREKIIRRAALEFKDGMHANLGIGMPMLASNYIPENVKVLLQSENGILGLG 341
           N   K +D L ++++   A +  + ++ NL  G+P + S++I EN   + +  + +  L 
Sbjct: 602 NALRKLSDVLAKQVVVSTAADSPNEVN-NLIAGLPEMQSSWIQENRDGMKKLLDDLTKLD 660

Query: 342 PFPTEEEVDADLINAG 357
            +  +   D DLI  G
Sbjct: 661 KYAKDHSSDKDLIKYG 676


>L10986-10|AAL08032.1|  111|Caenorhabditis elegans Hypothetical
           protein F10E9.11 protein.
          Length = 111

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 252 FVHVPSIYVHRIIKEDNFEKRIERKTTRKPNQTSKSTDSLREKIIRRAALEFKDGMHANL 311
           F     +Y+ R+ +E   EK+ ER    K N+T  +T+  R+K+ +  A   K G   NL
Sbjct: 31  FSQAQDVYL-RLKQEKEEEKQRERAEREKRNETIAATNKSRKKMNQALAKRNKKG-QPNL 88

Query: 312 GIGMPML 318
              M +L
Sbjct: 89  NAQMDVL 95


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.135    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,898,682
Number of Sequences: 27539
Number of extensions: 499967
Number of successful extensions: 1170
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1166
Number of HSP's gapped (non-prelim): 4
length of query: 516
length of database: 12,573,161
effective HSP length: 85
effective length of query: 431
effective length of database: 10,232,346
effective search space: 4410141126
effective search space used: 4410141126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)