GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000397-TA|BGIBMGA000397-PA|IPR001478|PDZ/DHR/GLGF
         (228 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           23   1.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   3.4  

>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 79  VGKRHYEVAKILKDIPKG-TTFIMRLVEPLKSGFGSIGPKTGSGRSGKKQNFGSGKETLR 137
           V +R+      +K +  G  T    +   + + F   GP TG G S K     + +  + 
Sbjct: 87  VARRNARERNRVKQVNNGFATLRQHIPASVAAAFAPQGPSTGRGASKKLSKVETLRLAVE 146

Query: 138 FKANGQATIENEHDD 152
           +  + +  IE+  +D
Sbjct: 147 YIRSLKQMIEDHEND 161


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 41  DNGAGYAFIKRIKEGSIVSRIPHIEVGDHIEKLNGENMV 79
           DNG G+  +K  +   +V+ + H+      +  N +N V
Sbjct: 620 DNGVGFLKVKENEITLLVATVRHVMAPSTCQPQNPDNDV 658


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.136    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,899
Number of Sequences: 317
Number of extensions: 1882
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 228
length of database: 114,650
effective HSP length: 55
effective length of query: 173
effective length of database: 97,215
effective search space: 16818195
effective search space used: 16818195
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 42 (21.0 bits)