GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000397-TA|BGIBMGA000397-PA|IPR001478|PDZ/DHR/GLGF
         (228 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    27   1.7  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    27   2.3  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    27   2.3  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    27   3.0  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    27   3.0  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    26   4.0  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   4.0  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    26   4.0  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    26   4.0  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    26   5.3  
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom...    25   7.0  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   9.2  

>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/45 (33%), Positives = 19/45 (42%)

Query: 77  NMVGKRHYEVAKILKDIPKGTTFIMRLVEPLKSGFGSIGPKTGSG 121
           +  GK   +       + K TT I RL+  L  G  S  PK G G
Sbjct: 61  SQAGKAESDGLPTYASVEKSTTPIGRLLSNLNGGLASAPPKVGFG 105


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/78 (23%), Positives = 33/78 (42%)

Query: 138 FKANGQATIENEHDDKSKAGIEKINGLLESFMGINDSELASQMWDLAEGKQNSMELAEAI 197
           F    QA +E E   + K   ++++G  E        + A +  +  + K   +EL +  
Sbjct: 529 FARKQQARVELEEQRRKKKEQDRLSGKFEKMTQKEREQYAKKENERWDKKIAEIELEQFH 588

Query: 198 DNSDLQEFGFTDEFIIEL 215
           D     +  + DEF +EL
Sbjct: 589 DYKPQVDIKYVDEFGVEL 606


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 85  EVAKILKDIPKGTTFIMRLVEPLKSGF 111
           EV  I+KD+  G +F++ + EP+   F
Sbjct: 111 EVTTIVKDLNNGDSFVLNVTEPVDPEF 137


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 170 GINDSELASQMWDLAEGKQNSMELAEAIDNSDLQEFGFTD 209
           G+ DSE+ + + D  + + + M   EAI+N +  E   TD
Sbjct: 549 GLTDSEIEAMVADAEKYRASDMARKEAIENGNRAESVCTD 588


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 146 IENEHDDKSKAGIEKINGLLESFMGINDSELASQMWDLAEGKQNSMELAEAI 197
           +  +  D S   +  +N   E F    + ELA + W +A+ +    +L EAI
Sbjct: 545 VSKDKKDISAVNLADLNKRFEGFEKRYEEELAIRDWKIAQLEDKLAKLTEAI 596


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 68  DHIEKLNGENMVGKRHYEVAKILKDIPKGT 97
           DH E +NG N+     YEVA   K + + T
Sbjct: 743 DHSEVINGVNLFSTAIYEVANNAKGLSRTT 772


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 18   HRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEGSIVSRIPHIEVGDHI 70
            H  G  KE+E      + G T+ ++    A + +      VSR+  +  G+H+
Sbjct: 1422 HISGFSKEVETDPKLGSSGYTLNNSKFDKAAVSKTLSAQDVSRLQKVSCGEHL 1474


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 166 ESFMGINDSELASQMWDLAEGKQNSMELAEAIDNSDLQE-FG 206
           +S + I    LA + W + EGK +  E+A+A     L E FG
Sbjct: 279 DSILEICRERLAPKGWKITEGKYSMKEVAQASKEGRLLEVFG 320


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 17/59 (28%), Positives = 23/59 (38%)

Query: 109 SGFGSIGPKTGSGRSGKKQNFGSGKETLRFKANGQATIENEHDDKSKAGIEKINGLLES 167
           S FG      G+    +K +FG+ K  L   A G+A    E    S +G     G   S
Sbjct: 546 SAFGQSSFSFGTSNMNQKLDFGTFKSPLSGAATGEAKTNLEKAVTSASGKASFTGFAPS 604


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 1/102 (0%)

Query: 126 KQNFGSGKETLRFKANGQATIENEHDDKSKAGIEK-INGLLESFMGINDSELASQMWDLA 184
           K+++         +A  Q  + ++ +  S A   K ++ +     GI+++E + +  ++ 
Sbjct: 52  KKDYCEAARAFGREAQVQTLVRSQEETNSLAKRHKRMSPVAVKHEGISNNESSDENMNVN 111

Query: 185 EGKQNSMELAEAIDNSDLQEFGFTDEFIIELWGVITDARSGR 226
            G  +S   + A     +        F+IE W V  D  + R
Sbjct: 112 NGNLDSFSSSSAPPPPPILPIDSAGGFLIEWWNVFWDIYNAR 153


>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 172 NDSELASQMW----DLAEGKQNSMELAEAIDNSDLQEFGFTDE 210
           ND E+++Q       LAE K ++  LA   D+ + QEF F D+
Sbjct: 145 NDVEISTQESLENNGLAEKKDDTSSLATLEDDIEGQEFSFDDQ 187


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 13  DFIFAHRKGRPKEIEIVKTEDALGLTITD 41
           D + +++   P E+ IVK    LGL +T+
Sbjct: 479 DGVVSYQAASPDEVAIVKWTSTLGLVLTN 507


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.136    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,028,763
Number of Sequences: 5004
Number of extensions: 43359
Number of successful extensions: 84
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 12
length of query: 228
length of database: 2,362,478
effective HSP length: 70
effective length of query: 158
effective length of database: 2,012,198
effective search space: 317927284
effective search space used: 317927284
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)