Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000397-TA|BGIBMGA000397-PA|IPR001478|PDZ/DHR/GLGF
(228 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0500 - 4171090-4171191,4171989-4172061,4172376-4172701,417... 33 0.25
12_02_1181 - 26732439-26732528,26732883-26732963,26733104-267331... 31 0.58
05_01_0342 - 2691294-2691441,2691589-2691667,2691737-2691799,269... 30 1.3
08_02_0341 + 15994817-15994852,15995371-15995439,15995667-159959... 29 4.1
10_01_0215 + 2318606-2319079,2319397-2319481,2319641-2319699 28 7.2
07_03_0224 + 15385572-15385747,15386311-15386383,15387310-153876... 28 7.2
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 28 7.2
01_06_1181 - 35169729-35169768,35169927-35169994,35170051-35171265 28 7.2
07_03_1296 + 25583195-25584385 27 9.5
07_03_0294 + 16342606-16343100,16343359-16344120 27 9.5
01_06_0161 + 27108920-27109279,27109479-27109598,27110301-271104... 27 9.5
>05_01_0500 -
4171090-4171191,4171989-4172061,4172376-4172701,
4173164-4173555,4174521-4174853,4177118-4177209,
4178052-4178111,4178760-4178903,4180142-4180213,
4180345-4180510,4180776-4180923
Length = 635
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/48 (33%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 182 DLAEGKQNSMELAEAIDNSDLQEFGFTDEFIIELWG-VITDARSGRLS 228
+ A + NS++L EA++ S +EF F+ EF+++++G ++++ +SG L+
Sbjct: 558 NFASDECNSIQL-EAVELSGPREFFFSPEFLVDMFGLLLSEVKSGLLA 604
>12_02_1181 -
26732439-26732528,26732883-26732963,26733104-26733163,
26733372-26733451,26733815-26733866,26733987-26734124,
26734203-26734466,26735895-26735952,26736153-26736262,
26736385-26736432,26736812-26736823
Length = 330
Score = 31.5 bits (68), Expect = 0.58
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 15/118 (12%)
Query: 81 KRHYEVAKILKDIPKGTTFIMRLVEPLKSGFGSIGPKTGSGRSGKKQNFGSGKETLRFKA 140
K HYE +I KGT V+ L SG G+ G TG+GR ++QN K
Sbjct: 164 KIHYETTG--PEIWKGTG---GKVDGLVSGIGTGGTITGAGRYLREQN-------PDIKI 211
Query: 141 NGQATIENEHDDKSKAGIEKINGLLESFM-GINDSELASQMWDLAEGKQNSMELAEAI 197
G +E+ K G KI G+ F+ G+ D +L ++ ++ ++E+A+A+
Sbjct: 212 YGVEPVESAVLSGGKPGPHKIQGIGAGFVPGVLDVDLINETVQVS--SDEAIEMAKAL 267
>05_01_0342 -
2691294-2691441,2691589-2691667,2691737-2691799,
2692852-2692917,2694939-2695004,2695194-2695283,
2695376-2695463,2695552-2695629,2695732-2695824,
2695907-2696024,2696418-2696539,2696633-2696930,
2697645-2697649
Length = 437
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 49 IKRIKEGSIVSRIPHIEVGDHIEKLNGENM 78
+K + EGSI+ ++ + +GD IE LNGE +
Sbjct: 179 VKEVSEGSILEKLG-VRIGDIIECLNGERI 207
>08_02_0341 +
15994817-15994852,15995371-15995439,15995667-15995973,
15996231-15996253
Length = 144
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 119 GSGRSGKKQNFGSGKETLRFKANGQATIENEHDDKSKAGIEKINGLLESFMGIN 172
G R GK+ E + F+ + E E DD S +G E NG S G+N
Sbjct: 61 GGNRKGKRSRVDKEDEEIEFEESEDGEEEVEFDDAS-SGAEDDNGHDVSIDGLN 113
>10_01_0215 + 2318606-2319079,2319397-2319481,2319641-2319699
Length = 205
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 170 GINDSELASQMWDLAEGKQNSMELAEAIDNSDLQEFGFTDEFIIEL 215
G D + +W +A+ K + +E E I D FG +D F+++L
Sbjct: 159 GFEDRKKVCTIW-VAQRKHSLLERNEDIFERDEDTFGVSDRFMVKL 203
>07_03_0224 +
15385572-15385747,15386311-15386383,15387310-15387658,
15387814-15387860,15387948-15388025,15388328-15388398,
15388514-15388601
Length = 293
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 24 KEIEIVKTEDALGLTITD----NGAGYAFIKRIKEGSIVSRIP 62
+ +EI+ +E + + ITD GY +K+IKE S + +IP
Sbjct: 208 RALEILGSEPNVSMIITDYWMPEMTGYDLLKKIKESSELKQIP 250
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 27.9 bits (59), Expect = 7.2
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 121 GRSGKKQNFGSGKETLRFKANGQATIENEHDDKSKAGIEK-INGLL---ESFMGINDSEL 176
G S + + GS ETL Q KSKA I+K ++ L E +M ++ E
Sbjct: 208 GESSESVSVGSQNETLCLDHELQHLSLERKSQKSKANIKKPVSSSLYKPEPWMLQHEDEG 267
Query: 177 ASQMWDLAEGKQNSMELAEAIDNS-DLQEFGFT 208
+ +LA GK S A A+D S D +E G T
Sbjct: 268 IPRQLNLAIGK-GSFAYAWAMDESADERERGIT 299
>01_06_1181 - 35169729-35169768,35169927-35169994,35170051-35171265
Length = 440
Score = 27.9 bits (59), Expect = 7.2
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 159 EKINGLLESFMGINDSELASQMWDLAEGKQNSMELAEAIDNSDLQEFGFTDEFIIELWGV 218
+K+ L++ M DSE+ +L E ++ +MEL E I S LQ+ G F I + GV
Sbjct: 156 QKLAVELQAGMCKRDSEIVCLRAELDELERKNMELEEKIGQSALQKEG---SFAIGM-GV 211
Query: 219 ITD 221
TD
Sbjct: 212 STD 214
>07_03_1296 + 25583195-25584385
Length = 396
Score = 27.5 bits (58), Expect = 9.5
Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 4/110 (3%)
Query: 120 SGRSGKKQNFGSGKETLRFK-ANGQATIENEHDDKSKAGIEKINGLLESFMGINDSELAS 178
+ +SG G G R K + + + G+E +G+ S +G + +
Sbjct: 273 ANKSGASSGVGVGPSRGRIKKTTARKKVGGGFKKNASGGVE--SGIEPSLLGPDSWNGVA 330
Query: 179 QMWDLAEGKQ-NSMELAEAIDNSDLQEFGFTDEFIIELWGVITDARSGRL 227
+ + + N E+A+ D S + FG +E +L TDA G L
Sbjct: 331 ESGSMVGARGININEVAKGTDGSSMMHFGGDEEIGFDLDVDATDAILGNL 380
>07_03_0294 + 16342606-16343100,16343359-16344120
Length = 418
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 104 VEPLKSGFGSIGPKTGSGRSGKKQNFGSGKETLRFKANGQ-ATIENEHDDKSKAGIEKIN 162
VE +SG+G +TG+G +++ +GK R G+ + E D+ G+ I+
Sbjct: 164 VEMGRSGYGRSEARTGAGTDADRESVPAGKGVARESVPGKLCELFGELDN----GLHLIS 219
Query: 163 GLL 165
GLL
Sbjct: 220 GLL 222
>01_06_0161 +
27108920-27109279,27109479-27109598,27110301-27110438,
27110680-27110784,27110883-27111051,27111507-27111583,
27111796-27111840,27111984-27112022,27112374-27112457,
27112846-27112884,27112963-27113025,27113109-27113238,
27113319-27113374
Length = 474
Score = 27.5 bits (58), Expect = 9.5
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 11/84 (13%)
Query: 35 LGLTITDNGAGYAFIKRIKEGSIVSRIPH---IEVGDHIEKLNGENMVGKRHYEVAKILK 91
+GL + + G K + G I+ H + GD + +NG +++GK ++V+ +L+
Sbjct: 172 IGLNLREIPDGNGSSKLMVLGLILDGPAHSAGVRQGDELLSVNGIDVMGKSAFDVSSMLQ 231
Query: 92 DIPKGTTFIMRL-------VEPLK 108
PK T +++ VEPLK
Sbjct: 232 G-PKDTFVTIKVKHGNCGPVEPLK 254
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.136 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,708,682
Number of Sequences: 37544
Number of extensions: 294498
Number of successful extensions: 574
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 11
length of query: 228
length of database: 14,793,348
effective HSP length: 80
effective length of query: 148
effective length of database: 11,789,828
effective search space: 1744894544
effective search space used: 1744894544
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)
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